The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. - John Quackenbush; Jennifer Cho; Daniel Lee; Feng Liang; Ingeborg Holt; Svetlana Karamycheva; Babak Parvizi; Geo Pertea; Razvan Sultana; Joseph White (Nucleic Acids Res., 2001)

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. - Geo Pertea; Xiaoqiu Huang 001; Feng Liang; Valentin Antonescu; Razvan Sultana; Svetlana Karamycheva; Yuandan Lee; Joseph White; Foo Cheung; Babak Parvizi; Jennifer Tsai; John Quackenbush (Bioinform., 2003)

MeSHer: identifying biological concepts in microarray assays based on PubMed references and MeSH terms. - Amira Djebbari; Svetlana Karamycheva; Eleanor Howe; John Quackenbush (Bioinform., 2005)

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. - Yuandan Lee; Jennifer Tsai; S. Sunkara; Svetlana Karamycheva; Geo Pertea; Razvan Sultana; Valentin Antonescu; Agnes P. Chan; Foo Cheung; John Quackenbush (Nucleic Acids Res., 2005)

Araport: the Arabidopsis Information Portal. - Vivek Krishnakumar; Matthew R. Hanlon; Sergio Contrino; Erik S. Ferlanti; Svetlana Karamycheva; Maria Kim; Benjamin D. Rosen; Chia-Yi Cheng; Walter Moreira; Stephen A. Mock; Joseph Stubbs; Julie M. Sullivan; et al. (Nucleic Acids Res., 2015)