PKAD: a database of experimentally measured pKa values of ionizable groups in proteins. - Swagata Pahari; Lexuan Sun; Emil Alexov (Database J. Biol. Databases Curation, 2019)

DelPhi Suite: New Developments and Review of Functionalities. - Chuan Li 003; Zhe Jia; Arghya Chakravorty; Swagata Pahari; Yunhui Peng; Sankar Basu; Mahesh Koirala; Shailesh Kumar Panday; Marharyta Petukh; Lin Li 003; Emil Alexov (J. Comput. Chem., 2019)

Capturing the Effects of Explicit Waters in Implicit Electrostatics Modeling: Qualitative Justification of Gaussian-Based Dielectric Models in DelPhi. - Arghya Chakravorty; Shailesh Kumar Panday; Swagata Pahari; Shan Zhao 001; Emil Alexov (J. Chem. Inf. Model., 2020)

SAAMBE-SEQ: a sequence-based method for predicting mutation effect on protein-protein binding affinity. - Gen Li; Swagata Pahari; Adithya Krishna Murthy; Siqi Liang 002; Robert Fragoza; Haiyuan Yu; Emil Alexov (Bioinform., 2021)