Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements. - Swaraj Basu; Ferenc Müller; Remo Sanges (BMC Bioinform., 2013)

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs. - Francesco Musacchia; Swaraj Basu; Giuseppe Petrosino; Marco Salvemini; Remo Sanges (Bioinform., 2015)

VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database. - Francesco Musacchia; Andrea Ciolfi; Margherita Mutarelli; Alessandro Bruselles; Raffaele Castello; Michele Pinelli; Swaraj Basu; Sandro Banfi; Giorgio Casari; Marco Tartaglia; Vincenzo Nigro (BMC Bioinform., 2018)