An Approach to Find Embedded Clusters Using Density Based Techniques. - Swarup Roy; D. K. Bhattacharyya (ICDCIT, 2005)

SCOPE: An Efficient One Pass Approach to Find Strongly Correlated Item Pairs. - Swarup Roy; D. K. Bhattacharyya (ICIT, 2008)

OPAM-An Efficient One Pass Association Mining Technique without Candidate Generation. - Swarup Roy; D. K. Bhattacharyya (J. Convergence Inf. Technol., 2008)

Deterministic Approach for Biclustering of Co-Regulated Genes from Gene Expression Data. - Swarup Roy; D. K. Bhattacharyya; Jugal K. Kalita (KES, 2012)

Causality Inference Techniques for In-Silico Gene Regulatory Network. - Swarup Roy; Dipankar Das; Dhrubajyoti Choudhury; Gunenja G. Gohain; Ramesh Sharma; Dhruba K. Bhattacharyya (MIKE, 2013)

Mining strongly correlated item pairs in large transaction databases. - Swarup Roy; Dhruba Kumar Bhattacharyya (Int. J. Data Min. Model. Manag., 2013)

CoBi: Pattern Based Co-Regulated Biclustering of Gene Expression Data. - Swarup Roy; Dhruba K. Bhattacharyya; Jugal K. Kalita (Pattern Recognit. Lett., 2013)

Reconstruction of gene co-expression network from microarray data using local expression patterns. - Swarup Roy; Dhruba K. Bhattacharyya; Jugal K. Kalita (BMC Bioinform., 2014)

Towards the assessment of GRN algorithms based on (disease) ontology. - Pietro Hiram Guzzi; Marianna Milano; Swarup Roy (BCB, 2015)

MODULA: A network module based local protein interaction network alignment method. - Pietro Hiram Guzzi; Pierangelo Veltri; Swarup Roy; Jugal K. Kalita (BIBM, 2015)

Trends in quantitative association rule mining techniques. - Dhrubajit Adhikary; Swarup Roy (ReTIS, 2015)

Big Data Analytics in Bioinformatics: A Machine Learning Perspective. - Hirak J. Kashyap; Hasin Afzal Ahmed; Nazrul Hoque; Swarup Roy; Dhruba Kumar Bhattacharyya (CoRR, 2015)

Unsupervised methods for finding protein complexes from PPI networks. - Pooja Sharma; Hasin Afzal Ahmed; Swarup Roy; Dhruba K. Bhattacharyya (Netw. Model. Anal. Health Informatics Bioinform., 2015)

Detecting protein complexes using connectivity among nodes in a PPI Network. - Pooja Sharma; Hasin Afzal Ahmed; Swarup Roy; Dhruba K. Bhattacharyya (Netw. Model. Anal. Health Informatics Bioinform., 2015)

Evaluating the Effectiveness of Soft K-Means in Detecting Overlapping Clusters. - Ronald Ashley Dkhar; Keshab Nath; Swarup Roy; Dhruba K. Bhattacharyya; Sukumar Nandi (ICTCS, 2016)

Computational Methods for Detecting Functional Modules from Gene Regulatory Network. - Hazel Nicolette Manners; Monica Jha; Pietro H. Guzzi; Pierangelo Veltri; Swarup Roy (ICTCS, 2016)

Information Theoretic Approaches for Detecting Causality in Gene Regulatory Networks. - Kangkan Medhi; Syed Sazzad Ahmed; Swarup Roy; Dhruba K. Bhattacharyya; Jugal K. Kalita (ICTCS, 2016)

Incremental Approach for Detecting Arbitrary and Embedded Cluster Structures. - Keshab Nath; Swarup Roy; Sukumar Nandi (MEDI, 2016)

New approximations for block sorting. - Jici Huang; Swarup Roy; Asai Asaithambi (Netw. Model. Anal. Health Informatics Bioinform., 2016)

Big data analytics in bioinformatics: architectures, techniques, tools and issues. - Hirak J. Kashyap; Hasin Afzal Ahmed; Nazrul Hoque; Swarup Roy; Dhruba Kumar Bhattacharyya (Netw. Model. Anal. Health Informatics Bioinform., 2016)

Network based algorithms for module extraction from RNASeq data: A quantitative assessment. - Monica Jha; Pierangelo Veltri; Pietro Hiram Guzzi; Swarup Roy (BIBM, 2017)

Performing local network alignment by ensembling global aligners. - Hazel N. Manners; Ahed Elmsallati; Pietro Hiram Guzzi; Swarup Roy; Jugal K. Kalita (BIBM, 2017)

Schemes for Labeling Semantic Code Clones using Machine Learning. - Abdullah Sheneamer; Hanan Hazazi; Swarup Roy; Jugal Kalita (ICMLA, 2017)

Ranking most informative apps for effective identification of legitimate smartphone owners. - Abdulaziz Alzubaidi; Swarup Roy; Jugal Kalita (INFOCOM Workshops, 2017)

Exploring Symmetric Substructures in Protein Interaction Networks for Pairwise Alignment. - Ahed Elmsallati; Swarup Roy; Jugal K. Kalita (IWBBIO (2), 2017)

A Novel Algorithm for Local Alignment of Protein Interaction Networks: MODULA. - Pietro Hiram Guzzi; Pierangelo Veltri; Swarup Roy; Jugal Kalita (SEBD, 2017)

Erratum to: New approximations for block sorting. - Jici Huang; Swarup Roy; Asai Asaithambi (Netw. Model. Anal. Health Informatics Bioinform., 2017)

Chemical Characterization of Interacting Genes in Few Subnetworks of Alzheimer's Disease. - Antara Sengupta; Pabitra Pal Choudhury; Hazel Nicolette Manners; Pietro Hiram Guzzi; Swarup Roy (BIBM, 2018)

A Parallel Approach to Detect Communities in Evolving Networks. - Keshab Nath; Swarup Roy (BDA, 2018)

Intrinsic-overlapping co-expression module detection with application to Alzheimer's Disease. - Hazel N. Manners; Swarup Roy; Jugal K. Kalita (Comput. Biol. Chem., 2018)

A detection framework for semantic code clones and obfuscated code. - Abdullah Sheneamer; Swarup Roy; Jugal Kalita (Expert Syst. Appl., 2018)

A data reduction scheme for active authentication of legitimate smartphone owner using informative apps ranking. - Abdulaziz Alzubaidi; Swarup Roy; Jugal Kalita (Digit. Commun. Networks, 2019)

Functional module extraction by ensembling the ensembles of selective module detectors. - Monica Jha; Pietro Hiram Guzzi; Pierangelo Veltri; Swarup Roy (Int. J. Comput. Biol. Drug Des., 2019)

Qualitative assessment of functional module detectors on microarray and RNASeq data. - Monica Jha; Pietro Hiram Guzzi; Swarup Roy (Netw. Model. Anal. Health Informatics Bioinform., 2019)

Detecting intrinsic communities in evolving networks. - Keshab Nath; Swarup Roy (Soc. Netw. Anal. Min., 2019)

Alignment of Protein-Protein Interaction Networks. - Swarup Roy; Hazel N. Manners; Ahed Elmsallati; Jugal K. Kalita (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

Pre-Processing: A Data Preparation Step. - Swarup Roy; Pooja Sharma; Keshab Nath; Dhruba K. Bhattacharyya; Jugal K. Kalita (Encyclopedia of Bioinformatics and Computational Biology (1), 2019)

InOvIn: A fuzzy-rough approach for detecting overlapping communities with intrinsic structures in evolving networks. - Keshab Nath; Swarup Roy; Sukumar Nandi (Appl. Soft Comput., 2020)

Prioritizing disease biomarkers using functional module based network analysis: A multilayer consensus driven scheme. - Monica Jha; Swarup Roy; Jugal K. Kalita (Comput. Biol. Medicine, 2020)

Assessing the Effectiveness of Causality Inference Methods for Gene Regulatory Networks. - Syed Sazzad Ahmed; Swarup Roy; Jugal Kalita (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

An Effective Semantic Code Clone Detection Framework Using Pairwise Feature Fusion. - Abdullah Sheneamer; Swarup Roy; Jugal Kalita (IEEE Access, 2021)

Data science in unveiling COVID-19 pathogenesis and diagnosis: evolutionary origin to drug repurposing. - Jayanta Kumar Das; Giuseppe Tradigo; Pierangelo Veltri; Pietro H. Guzzi; Swarup Roy (Briefings Bioinform., 2021)

Analyzing Host-Viral Interactome of SARS-CoV-2 for Identifying Vulnerable Host Proteins during COVID-19 Pathogenesis. - Jayanta Kumar Das; Swarup Roy; Pietro Hiram Guzzi (CoRR, 2021)

A scheme for inferring viral-host associations based on codon usage patterns identifies the most affected signaling pathways during COVID-19. - Jayanta Kumar Das; Subhadip Chakraborty; Swarup Roy (J. Biomed. Informatics, 2021)

Missing Link Identification from Node Embeddings using Graph Auto Encoders and its Variants. - Binon Teji; Swarup Roy (OCIT, 2022)

CARES: CAuse Recognition for Emotion in Suicide Notes. - Soumitra Ghosh; Swarup Roy; Asif Ekbal; Pushpak Bhattacharyya (ECIR (2), 2022)

Improved Fuzzy Based Segmentation with Hybrid Classification for Skin Disease Detection. - Dasari Anantha Reddy; Swarup Roy; Sanjay Kumar; Rakesh Tripathi; Neel Prabha (ICMLDE, 2023)

A generic parallel framework for inferring large-scale gene regulatory networks from expression profiles: application to Alzheimer's disease network. - Softya Sebastian; Swarup Roy; Jugal Kalita (Briefings Bioinform., 2023)

Editorial: Graph representation learning in biological network. - Swarup Roy; Pietro Hiram Guzzi; Jugal Kalita (Frontiers Bioinform., 2023)

Enhanced U-Net segmentation with ensemble convolutional neural network for automated skin disease classification. - Dasari Anantha Reddy; Swarup Roy; Sanjay Kumar; Rakesh Tripathi (Knowl. Inf. Syst., 2023)

Application of Generative Graph Models in Biological Network Regeneration: A Selective Review and Qualitative Analysis. - Binon Teji; Swarup Roy; Pietro Hiram Guzzi; Dinabandhu Bhandari (BIBM, 2024)

Graph Embedding Techniques for Predicting Missing Links in Biological Networks: An Empirical Evaluation. - Binon Teji; Swarup Roy; Devendra Singh Dhami; Dinabandhu Bhandari; Pietro Hiram Guzzi (IEEE Trans. Emerg. Top. Comput., 2024)

Network-based analysis of Alzheimer's Disease genes using multi-omics network integration with graph diffusion. - Softya Sebastian; Swarup Roy; Jugal Kalita (J. Biomed. Informatics, 2025)

A Novel Graph Transformer Framework for Gene Regulatory Network Inference. - Binon Teji; Swarup Roy (CoRR, 2025)