ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments. - Swneke D. Bailey; Carl Virtanen; Benjamin Haibe-Kains; Mathieu Lupien (Bioinform., 2015)

C3D: a tool to predict 3D genomic interactions between cis-regulatory elements. - Tahmid Mehdi; Swneke D. Bailey; Paul Guilhamon; Mathieu Lupien (Bioinform., 2019)