Multiple RNA Interaction - Formulations, Approximations, and Heuristics. - Saad Mneimneh; Syed Ali Ahmed; Nancy L. Greenbaum (BIOINFORMATICS, 2013)

A Combinatorial Approach for Multiple RNA Interaction: Formulations, Approximations, and Heuristics. - Syed Ali Ahmed; Saad Mneimneh; Nancy L. Greenbaum (COCOON, 2013)

Multiple RNA Interaction with Sub-optimal Solutions. - Syed Ali Ahmed; Saad Mneimneh (ISBRA, 2014)

A Sampling Approach for Multiple RNA Interaction - Finding Sub-optimal Solutions Fast. - Saad Mneimneh; Syed Ali Ahmed (BIOINFORMATICS, 2016)

A Combinatorial Framework for Multiple RNA Interaction Prediction. - Syed Ali Ahmed (2017)

Making Multiple RNA Interaction Practical. - Syed Ali Ahmed; Saman Farhat; Saad Mneimneh (COCOA, 2018)

Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-Optimal Solutions. - Syed Ali Ahmed; Saad Mneimneh (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)