Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). - Syed Asad Rahman; P. Advani; R. Schunk; Rainer Schrader; Dietmar Schomburg (Bioinform., 2005)

Metabolic Network Analysis: Implication And Application. - Syed Asad Rahman; Pardha Saradhi Jonnalagadda; Jyothi Padiadpu; Kai Hartmann; Rainer Schrader; Dietmar Schomburg (BMC Bioinform., 2005)

Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks. - Syed Asad Rahman; Dietmar Schomburg (Bioinform., 2006)

Pathway Hunter Tool (PHT) A Platform for Metabolic Network Analysis and Potential Drug Targeting - Syed Asad Rahman (2008)

Small Molecule Subgraph Detector (SMSD) toolkit. - Syed Asad Rahman; Matthew Bashton; Gemma L. Holliday; Rainer Schrader; Janet M. Thornton (J. Cheminformatics, 2009)

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. - Nicholas Furnham; Ian Sillitoe; Gemma L. Holliday; Alison L. Cuff; Syed Asad Rahman; Roman A. Laskowski; Christine A. Orengo; Janet M. Thornton (Nucleic Acids Res., 2012)

MACiE: exploring the diversity of biochemical reactions. - Gemma L. Holliday; Claudia Andreini; Julia D. Fischer; Syed Asad Rahman; Daniel E. Almonacid; Sophie T. Williams; William R. Pearson (Nucleic Acids Res., 2012)

The EBI enzyme portal. - Rafael Alcántara; Joseph Onwubiko; Hong Cao; Paula de Matos; Jennifer A. Cham; Julius O. B. Jacobsen; Gemma L. Holliday; Julia D. Fischer; Syed Asad Rahman; Bijay Jassal; Mickael Goujon; Francis Rowland; et al. (Nucleic Acids Res., 2013)

Reaction Decoder Tool (RDT): extracting features from chemical reactions. - Syed Asad Rahman; Gilliean Torrance; Lorenzo Baldacci; Sergio Martínez Cuesta; Franz Fenninger; Nimish Gopal; Saket Choudhary; John W. May; Gemma L. Holliday; Christoph Steinbeck; Janet M. Thornton (Bioinform., 2016)