DeepSIRT: A deep neural network for identification of sirtuin targets and their subcellular localizations. - Syed Muazzam Ali Shah; Semmy Wellem Taju; Bongani Brian Dlamini; Yu-Yen Ou (Comput. Biol. Chem., 2021)

ActTRANS: Functional classification in active transport proteins based on transfer learning and contextual representations. - Semmy Wellem Taju; Syed Muazzam Ali Shah; Yu-Yen Ou (Comput. Biol. Chem., 2021)

TRP-BERT: Discrimination of transient receptor potential (TRP) channels using contextual representations from deep bidirectional transformer based on BERT. - Syed Muazzam Ali Shah; Yu-Yen Ou (Comput. Biol. Medicine, 2021)

GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models. - Syed Muazzam Ali Shah; Semmy Wellem Taju; Quang-Thai Ho; Trinh-Trung-Duong Nguyen; Yu-Yen Ou (Comput. Biol. Medicine, 2021)