BC-TFdb: a database of transcription factor drivers in breast cancer. - Abbas Khan; Taimoor Khan; Syed Nouman Nasir; Syed Shujait Ali; Muhammad Suleman; Muhammad Rizwan; Muhammad Waseem; Shahid Ali; Xia Zhao; Dong-Qing Wei (Database J. Biol. Databases Curation, 2021)

CytomegaloVirusDb: Multi-omics knowledge database for cytomegaloviruses. - Taimoor Khan; Abbas Khan; Syed Nouman Nasir; Sajjad Ahmad; Syed Shujait Ali; Dong-Qing Wei (Comput. Biol. Medicine, 2021)

Immunogenomics guided design of immunomodulatory multi-epitope subunit vaccine against the SARS-CoV-2 new variants, and its validation through in silico cloning and immune simulation. - Abbas Khan; Shahzeb Khan; Shoaib Saleem; N. Nizam-Uddin; Anwar Mohammad; Taimoor Khan; Sajjad Ahmad; Muhammad Arshad 013; Syed Shujait Ali; Muhammad Suleman; Dong-Qing Wei (Comput. Biol. Medicine, 2021)

Bioinformatics analysis of the differences in the binding profile of the wild-type and mutants of the SARS-CoV-2 spike protein variants with the ACE2 receptor. - Muhammad Suleman; Qudsia Yousafi; Javaid Ali; Syed Shujait Ali; Zahid Hussain; Shahid Ali; Muhammad Waseem; Arshad Iqbal; Sajjad Ahmad; Abbas Khan; Yanjing Wang 003; Dong-Qing Wei (Comput. Biol. Medicine, 2021)

Genome-wide screening of vaccine targets prioritization and reverse vaccinology aided design of peptides vaccine to enforce humoral immune response against Campylobacter jejuni. - Adnan Zeb; Syed Shujait Ali; Abul Kalam Azad; Muhammad Safdar; Zeeshan Anwar; Muhammad Suleman; N. Nizam-Uddin; Abbas Khan; Dong-Qing Wei (Comput. Biol. Medicine, 2021)

Computational modelling of potentially emerging SARS-CoV-2 spike protein RBDs mutations with higher binding affinity towards ACE2: A structural modelling study. - Abbas Khan; Sarfaraz Hussain; Sajjad Ahmad; Muhammad Suleman; Imrana Bukhari; Taimoor Khan; Farooq Rashid; Abul Kalam Azad; Muhammad Waseem; Wajid Khan; Zahid Hussain; Asghar Khan; et al. (Comput. Biol. Medicine, 2022)

Subtractive proteomics assisted therapeutic targets mining and designing ensemble vaccine against Candida auris for immune response induction. - Taimoor Khan; Muhammad Suleman; Syed Shujait Ali; Muhammad Farhan Sarwar; Imtiaz Ali; Liaqat Ali; Abbas Khan; Bakht Rokhan; Yanjing Wang 003; Ruili Zhao; Dong-Qing Wei (Comput. Biol. Medicine, 2022)

Evaluation and identification of essential therapeutic proteins and vaccinomics approach towards multi-epitopes vaccine designing against Legionella pneumophila for immune response instigation. - Ismail Shah; Sehrooz Jamil; Saira Rehmat; Hammad Ahmad Butt; Syed Shujait Ali; Muhammad Idrees; Yifei Zhan; Zahid Hussain; Shahid Ali; Muhammad Waseem; Arshad Iqbal; Sajjad Ahmad; et al. (Comput. Biol. Medicine, 2022)

Comparative mutational analysis of SARS-CoV-2 isolates from Pakistan and structural-functional implications using computational modelling and simulation approaches. - Abdullah Shah; Saira Rehmat; Iqra Aslam; Muhmmad Suleman; Farah Batool; Abdul Aziz; Farooq Rashid; Midrarullah; Muhmmad Asif Nawaz; Syed Shujait Ali; Muhammad Junaid; Abbas Khan; et al. (Comput. Biol. Medicine, 2022)

Screening of immune epitope in the proteome of the Dabie bandavirus, SFTS, to design a protein-specific and proteome-wide vaccine for immune response instigation using an immunoinformatics approaches. - Muhammad Suleman; Uzair Asad; Shafia Arshad; Ayaz ur Rahman; Fazal Akbar; Haji Khan; Zahid Hussain; Syed Shujait Ali; Anwar Mohammad; Abbas Khan; Liaqat Ali; Dong-Qing Wei (Comput. Biol. Medicine, 2022)

Using a dual immunoinformatics and bioinformatics approach to design a novel and effective multi-epitope vaccine against human torovirus disease. - Sajjad Ahmad; Syed Shujait Ali; Arshad Iqbal; Shahid Ali; Zahid Hussain; Ishaq Khan; Hayat Khan (Comput. Biol. Chem., 2024)

Computational profiling of molecular biomarkers in congenital disorders of glycosylation Type-I and binding analysis of Ginkgolide A with P4HB. - Muhammad Rahiyab; Ishaq Khan; Syed Shujait Ali; Zahid Hussain; Shahid Ali; Arshad Iqbal (Comput. Biol. Medicine, 2025)