Computing medial surfaces. - Sylvain Bouix; Kaleem Siddiqi (Discrete Mathematical Problems with Medical Applications, 1999)

The Hamilton-Jacobi Skeleton. - Kaleem Siddiqi; Sylvain Bouix; Allen R. Tannenbaum; Steven W. Zucker (ICCV, 1999)

Real Time Video Scene Detection and Classification. - John M. Gauch; Susan Gauch; Sylvain Bouix; Xiaolan Zhu (Inf. Process. Manag., 1999)

Divergence-Based Medial Surfaces. - Sylvain Bouix; Kaleem Siddiqi (ECCV (1), 2000)

Angle-preserving mappings for the visualization of multi-branched vessels. - Lei Zhu 001; Steven Haker; Sylvain Bouix; Kaleem Siddiqi; Allen R. Tannenbaum (ICIP (2), 2002)

Hamilton-Jacobi Skeletons. - Kaleem Siddiqi; Sylvain Bouix; Allen R. Tannenbaum; Steven W. Zucker (Int. J. Comput. Vis., 2002)

Flux Driven Fly Throughs. - Sylvain Bouix; Kaleem Siddiqi; Allen R. Tannenbaum (CVPR (1), 2003)

Anatomical Guided Segmentation with Non-Stationary Tissue Class Distributions in an Expectation-Maximization Framework. - Kilian M. Pohl; W. Eric L. Grimson; Sylvain Bouix; Ron Kikinis (ISBI, 2004)

Evaluating Automatic Brain Tissue Classifiers. - Sylvain Bouix; Lida Ungar; Chandlee C. Dickey; Robert W. McCarley; Martha Elizabeth Shenton (MICCAI (2), 2004)

Characterizing the Shape of Anatomical Structures with Poisson?s Equation. - Haissam Haidar; Sylvain Bouix; James J. Levitt; Chandley C. Dickey; Robert W. McCarley; Martha Elizabeth Shenton; Janet S. Soul (MICCAI (1), 2004)

Two Methods for Validating Brain Tissue Classifiers. - Marcos Martín-Fernández; Sylvain Bouix; Lida Ungar; Robert W. McCarley; Martha Elizabeth Shenton (MICCAI, 2005)

Flux driven automatic centerline extraction. - Sylvain Bouix; Kaleem Siddiqi; Allen R. Tannenbaum (Medical Image Anal., 2005)

Hippocampal shape analysis using medial surfaces. - Sylvain Bouix; Jens C. Pruessner; D. Louis Collins; Kaleem Siddiqi (NeuroImage, 2005)

Medial Axis Computation and Evolution. - Sylvain Bouix; Kaleem Siddiqi; Allen R. Tannenbaum; Steven W. Zucker (Statistics and Analysis of Shapes, 2006)

On diffusion tensor estimation. - Marc Niethammer; Raúl San José Estépar; Sylvain Bouix; Martha Shenton; Carl-Fredrik Westin (EMBC (Supplement), 2006)

Fiber Bundle Estimation and Parameterization. - Marc Niethammer; Sylvain Bouix; Carl-Fredrik Westin; Martha Elizabeth Shenton (MICCAI (2), 2006)

Characterizing the shape of anatomical structures with Poisson's equation. - Haissam Haidar; Sylvain Bouix; James J. Levitt; Robert W. McCarley; Martha Elizabeth Shenton; Janet S. Soul (IEEE Trans. Medical Imaging, 2006)

Global Medical Shape Analysis Using the Volumetric Laplace Spectrum. - Martin Reuter 001; Marc Niethammer; Franz-Erich Wolter; Sylvain Bouix; Martha Elizabeth Shenton (CW, 2007)

Outlier Rejection for Diffusion Weighted Imaging. - Marc Niethammer; Sylvain Bouix; Santiago Aja-Fernández; Carl-Fredrik Westin; Martha Elizabeth Shenton (MICCAI (1), 2007)

Global Medical Shape Analysis Using the Laplace-Beltrami Spectrum. - Marc Niethammer; Martin Reuter 001; Franz-Erich Wolter; Sylvain Bouix; Niklas Peinecke; Min-Seong Koo; Martha Elizabeth Shenton (MICCAI (1), 2007)

Using the logarithm of odds to define a vector space on probabilistic atlases. - Kilian M. Pohl; John W. Fisher III; Sylvain Bouix; Martha Elizabeth Shenton; Robert W. McCarley; W. Eric L. Grimson; Ron Kikinis; William M. Wells III (Medical Image Anal., 2007)

On evaluating brain tissue classifiers without a ground truth. - Sylvain Bouix; Marcos Martín-Fernández; Lida Ungar; Motoaki Nakamura; Min-Seong Koo; Robert W. McCarley; Martha Elizabeth Shenton (NeuroImage, 2007)

A Hierarchical Algorithm for MR Brain Image Parcellation. - Kilian M. Pohl; Sylvain Bouix; Motoaki Nakamura; Torsten Rohlfing; Robert W. McCarley; Ron Kikinis; W. Eric L. Grimson; Martha Elizabeth Shenton; William M. Wells III (IEEE Trans. Medical Imaging, 2007)

Skeletons via Shocks of Boundary Evolution. - Kaleem Siddiqi; Sylvain Bouix; Jayant Shah (Medial Representations, 2008)

Orientation distribution estimation for Q-ball imaging. - Yogesh Rathi; Oleg V. Michailovich; Sylvain Bouix; Martha Elizabeth Shenton (CVPR Workshops, 2008)

Retrieving articulated 3-D models using medial surfaces. - Kaleem Siddiqi; Juan Zhang; Diego Macrini; Ali Shokoufandeh; Sylvain Bouix; Sven J. Dickinson (Mach. Vis. Appl., 2008)

Local White Matter Geometry Indices from Diffusion Tensor Gradients. - Peter Savadjiev; Gordon L. Kindlmann; Sylvain Bouix; Martha Elizabeth Shenton; Carl-Fredrik Westin (MICCAI (1), 2009)

Directional functions for orientation distribution estimation. - Yogesh Rathi; Oleg V. Michailovich; Martha Elizabeth Shenton; Sylvain Bouix (Medical Image Anal., 2009)

Disease classification: a probabilistic approach. - Yogesh Rathi; James G. Malcolm; Sylvain Bouix; Robert W. McCarley; Larry J. Seidman; Jill M. Goldstein; Carl-Fredrik Westin; Martha Elizabeth Shenton (ISBI, 2010)

A filtered approach to neural tractography using the Watson directional function. - James G. Malcolm; Oleg V. Michailovich; Sylvain Bouix; Carl-Fredrik Westin; Martha Elizabeth Shenton; Yogesh Rathi (Medical Image Anal., 2010)

Local white matter geometry from diffusion tensor gradients. - Peter Savadjiev; Gordon L. Kindlmann; Sylvain Bouix; Martha Elizabeth Shenton; Carl-Fredrik Westin (NeuroImage, 2010)

White Matter Bundle Registration and Population Analysis Based on Gaussian Processes. - Demian Wassermann; Yogesh Rathi; Sylvain Bouix; Marek Kubicki; Ron Kikinis; Martha Elizabeth Shenton; Carl-Fredrik Westin (IPMI, 2011)

Improving Registration Using Multi-channel Diffeomorphic Demons Combined with Certainty Maps. - Daniel Forsberg; Yogesh Rathi; Sylvain Bouix; Demian Wassermann; Hans Knutsson; Carl-Fredrik Westin (MBIA, 2011)

Sparse Multi-Shell Diffusion Imaging. - Yogesh Rathi; Oleg V. Michailovich; Kawin Setsompop; Sylvain Bouix; Martha Elizabeth Shenton; Carl-Fredrik Westin (MICCAI (2), 2011)

Stochastic tractography study of Inferior Frontal Gyrus anatomical connectivity in schizophrenia. - Marek Kubicki; Jorge L. Alvarado; Carl-Fredrik Westin; David F. Tate; Douglas Markant; Douglas P. Terry; Thomas J. Whitford; Julien De Siebenthal; Sylvain Bouix; Robert W. McCarley; Ron Kikinis; Martha Elizabeth Shenton (NeuroImage, 2011)

Statistical Shape Analysis for Population Studies via Level-Set Based Shape Morphing. - Tammy Riklin Raviv; Yi Gao 002; James J. Levitt; Sylvain Bouix (ECCV Workshops (1), 2012)

Synthesis of Realistic Subcortical Anatomy with Known Surface Deformations. - Yi Gao 002; Sylvain Bouix (MeshMed, 2012)

Multi-scale Characterization of White Matter Tract Geometry. - Peter Savadjiev; Yogesh Rathi; Sylvain Bouix; Ragini Verma; Carl-Fredrik Westin (MICCAI (3), 2012)

A 3D interactive multi-object segmentation tool using local robust statistics driven active contours. - Yi Gao 002; Ron Kikinis; Sylvain Bouix; Martha Elizabeth Shenton; Allen R. Tannenbaum (Medical Image Anal., 2012)

Longitudinal loss of gray matter volume in patients with first-episode schizophrenia: DARTEL automated analysis and ROI validation. - Takeshi Asami; Sylvain Bouix; Thomas J. Whitford; Martha Elizabeth Shenton; Dean F. Salisbury; Robert W. McCarley (NeuroImage, 2012)

Filtering in the Diffeomorphism Group and the Registration of Point Sets. - Yi Gao 002; Yogesh Rathi; Sylvain Bouix; Allen R. Tannenbaum (IEEE Trans. Image Process., 2012)

Combining Surface and Fiber Geometry: An Integrated Approach to Brain Morphology. - Peter Savadjiev; Yogesh Rathi; Sylvain Bouix; Alex R. Smith; Robert T. Schultz; Ragini Verma; Carl-Fredrik Westin (MICCAI (1), 2013)

Sparse Texture Active Contour. - Yi Gao 002; Sylvain Bouix; Martha Elizabeth Shenton; Allen R. Tannenbaum (IEEE Trans. Image Process., 2013)

Signed poisson map for shape analysis. - Yi Gao 002; Sylvain Bouix (ISBI, 2014)

Depth-Based Shape-Analysis. - Yi Hong 006; Yi Gao 002; Marc Niethammer; Sylvain Bouix (MICCAI (3), 2014)

A framework for joint image-and-shape analysis. - Yi Gao 002; Allen R. Tannenbaum; Sylvain Bouix (Image Processing, 2014)

Interpolation of longitudinal shape and image data via optimal mass transport. - Yi Gao 002; Liangjia Zhu; Sylvain Bouix; Allen R. Tannenbaum (Image Processing, 2014)

Fusion of white and gray matter geometry: A framework for investigating brain development. - Peter Savadjiev; Yogesh Rathi; Sylvain Bouix; Alex R. Smith; Robert T. Schultz; Ragini Verma; Carl-Fredrik Westin (Medical Image Anal., 2014)

Statistical Shape Analysis of Neuroanatomical Structures via Level-Set-based Shape Morphing. - Tammy Riklin Raviv; Yi Gao 002; James J. Levitt; Sylvain Bouix (SIAM J. Imaging Sci., 2014)

Sample Size Estimation for Outlier Detection. - Timothy Gebhard; Inga Koerte; Sylvain Bouix (MICCAI (3), 2015)

Harmonizing Diffusion MRI Data Across Multiple Sites and Scanners. - Hengameh Mirzaalian; Amicie de Pierrefeu; Peter Savadjiev; Ofer Pasternak; Sylvain Bouix; Marek Kubicki; Carl-Fredrik Westin; Martha Elizabeth Shenton; Yogesh Rathi (MICCAI (1), 2015)

Sparse model learning for high dimensional diffusion MRI data in traumatic brain injury. - Matineh Shaker; Deniz Erdogmus; Jennifer G. Dy; Sylvain Bouix (MLSP, 2015)

Shape analysis based on depth-ordering. - Yi Hong 006; Yi Gao 002; Marc Niethammer; Sylvain Bouix (Medical Image Anal., 2015)

A Kalman Filtering Perspective for Multiatlas Segmentation. - Yi Gao 002; Liangjia Zhu; Joshua Cates; Rob S. MacLeod; Sylvain Bouix; Allen R. Tannenbaum (SIAM J. Imaging Sci., 2015)

Statistical shape analysis using 3D Poisson equation - A quantitatively validated approach. - Yi Gao 002; Sylvain Bouix (Medical Image Anal., 2016)

Inter-site and inter-scanner diffusion MRI data harmonization. - Hengameh Mirzaalian; Lipeng Ning; Peter Savadjiev; Ofer Pasternak; Sylvain Bouix; Oleg V. Michailovich; Gerald Grant; Christine E. Marx; Rajendra A. Morey; Laura A. Flashman; Marie St. George; Thomas W. McAllister; et al. (NeuroImage, 2016)

"Evaluating Acquisition Time of rfMRI in the Human Connectome Project for Early Psychosis. How Much Is Enough?". - Sylvain Bouix; Sophia Swago; John D. West; Ofer Pasternak; Alan Breier; Martha Elizabeth Shenton (CNI@MICCAI, 2017)

Pairwise, Ordinal Outlier Detection of Traumatic Brain Injuries. - Matt Higger; Martha Shenton; Sylvain Bouix (BrainLes@MICCAI, 2017)

Subject-specific abnormal region detection in traumatic brain injury using sparse model selection on high dimensional diffusion data. - Matineh Shaker; Deniz Erdogmus; Jennifer G. Dy; Sylvain Bouix (Medical Image Anal., 2017)

A comparison of three fiber tract delineation methods and their impact on white matter analysis. - Valerie J. Sydnor; Ana María Rivas-Grajales; Amanda E. Lyall; Fan Zhang 013; Sylvain Bouix; Sarina Karmacharya; Martha Elizabeth Shenton; Carl-Fredrik Westin; Nikos Makris; Demian Wassermann; Lauren J. O'Donnell; Marek Kubicki (NeuroImage, 2018)

Retrospective harmonization of multi-site diffusion MRI data acquired with different acquisition parameters. - Suheyla Cetin Karayumak; Sylvain Bouix; Lipeng Ning; Anthony James; Tim J. Crow; Martha Shenton; Marek Kubicki; Yogesh Rathi (NeuroImage, 2019)

Agglomerative Region-Based Analysis. - Matt Higger; Demian Wassermann; Martha Shenton; Sylvain Bouix (ISBI, 2020)

GradICON: Approximate Diffeomorphisms via Gradient Inverse Consistency. - Lin Tian 001; Thomas Hastings Greer; François-Xavier Vialard; Roland Kwitt; Raúl San José Estépar; Richard Jarrett Rushmore; Nikolaos Makris; Sylvain Bouix; Marc Niethammer (CVPR, 2023)

Inverse Consistency by Construction for Multistep Deep Registration. - Thomas Hastings Greer; Lin Tian 001; François-Xavier Vialard; Roland Kwitt; Sylvain Bouix; Raúl San José Estépar; Richard J. Rushmore; Marc Niethammer (MICCAI (10), 2023)

uniGradICON: A Foundation Model for Medical Image Registration. - Lin Tian 001; Thomas Hastings Greer; Roland Kwitt; François-Xavier Vialard; Raúl San José Estépar; Sylvain Bouix; Richard J. Rushmore; Marc Niethammer (MICCAI (2), 2024)

MultiGradICON: A Foundation Model for Multimodal Medical Image Registration. - Basar Demir; Lin Tian 001; Thomas Hastings Greer; Roland Kwitt; François-Xavier Vialard; Raúl San José Estépar; Sylvain Bouix; Richard J. Rushmore; Ebrahim Ebrahim; Marc Niethammer (WBIR, 2024)

Improving Quality Control of MRI Images Using Synthetic Motion Data. - Charles Bricout; Kang Ik Kevin Cho; Michael Harms; Ofer Pasternak; Carrie E. Bearden; Patrick D. McGorry; Rene S. Kahn; JM Kane; B. Nelson; Scott W. Woods; Martha Elizabeth Shenton; Sylvain Bouix; et al. (ISBI, 2025)

Improving Quality Control Of MRI Images Using Synthetic Motion Data. - Charles Bricout; Kang Ik Kevin Cho; Michael Harms; Ofer Pasternak; Carrie E. Bearden; Patrick D. McGorry; Rene S. Kahn; John Kane; Barnaby Nelson; Scott W. Woods; Martha Elizabeth Shenton; Sylvain Bouix; et al. (CoRR, 2025)

Estimating Head Motion in Structural MRI Using a Deep Neural Network Trained on Synthetic Artifacts. - Charles Bricout; Samira Ebrahimi Kahou; Sylvain Bouix (CoRR, 2025)

SimCortex: Collision-free Simultaneous Cortical Surfaces Reconstruction. - Kaveh Moradkhani; Richard Jarrett Rushmore; Sylvain Bouix (CoRR, 2025)