Generalized Simulated Annealing for Global Optimization: The GenSA Package. - Yang Xiang; Sylvain Gubian; Brian Suomela; Julia Hoeng (R J., 2013)

NPA: an R package for computing network perturbation amplitudes using gene expression data and two-layer networks. - Florian Martin 002; Sylvain Gubian; Marja Talikka; Julia Hoeng; Manuel C. Peitsch (BMC Bioinform., 2019)