Evolutionary Constraint Networks in Ligand-Binding Domains: An Information-Theoretic Approach. - Sylvia B. Nagl; James Freeman; Temple F. Smith (Pacific Symposium on Biocomputing, 1999)

Protein Evolution as a Parallel-distributed Process: A Novel Approach to Evolutionary Modeling and Protein Design. - Sylvia B. Nagl (Complex Syst., 2000)

Can Correlated Mutations in Protein Domain Families Be Used for Protein Design? - Sylvia B. Nagl (Briefings Bioinform., 2001)

Modulated Events in Agent-Based Modeling and Simulation. - Chih-Chun Chen 001; Sylvia B. Nagl; Christopher D. Clack (MSV, 2007)

Specifying, detecting and analysing emergent behaviours in multi-level agent-based simulations. - Chih-Chun Chen 001; Sylvia B. Nagl; Christopher D. Clack (SCSC, 2007)

Model-driven architecture for cancer research. - Radu Calinescu; Steve Harris; Jeremy Gibbons; Jim Davies; Igor Toujilov; Sylvia B. Nagl (SEFM, 2007)

Context sensitivity in individual-based modeling. - Chih-Chun Chen 001; Christopher D. Clack; Sylvia B. Nagl (BMC Syst. Biol., 2007)

A Method for Validating and Discovering Associations between Multi-level Emergent Behaviours in Agent-Based Simulations. - Chih-Chun Chen 001; Sylvia B. Nagl; Christopher D. Clack (KES-AMSTA, 2008)

Objective Bayesian Nets for Systems Modelling and Prognosis in Breast Cancer. - Sylvia B. Nagl; Matthew Williams 001; Jon Williamson (Innovations in Bayesian Networks, 2008)

Complexity and Emergence in Engineering Systems. - Chih-Chun Chen 001; Sylvia B. Nagl; Christopher D. Clack (Complex Systems in Knowledge-based Environments, 2009)

Identifying Multi-Level Emergent Behaviors in Agent-Directed Simulations using Complex Event Type Specifications. - Chih-Chun Chen 001; Christopher D. Clack; Sylvia B. Nagl (Simul., 2010)