Alternative K-Space Sampling Distributions for MR Spectrososcopic Imaging. - Sylvia K. Plevritis; Albert Macovski (ICIP (3), 1994)

Spectral extrapolation of spatially bounded images [MRI application]. - Sylvia K. Plevritis; Albert Macovski (IEEE Trans. Medical Imaging, 1995)

A modified Dirichlet process mixture model for clustering phosphopeptides based on their response to anti-cancer drug perturbation. - Babak Shahbaba; Eva Prenosil; Anjali Jain; Sylvia K. Plevritis (BIOCOMP, 2008)

Fast calculation of pairwise mutual information for gene regulatory network reconstruction. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (Comput. Methods Programs Biomed., 2009)

Simultaneous Class Discovery and Classification of Microarray Data Using Spectral Analysis. - Peng Qiu; Sylvia K. Plevritis (J. Comput. Biol., 2009)

Reducing the Computational Complexity of Information Theoretic Approaches for Reconstructing Gene Regulatory Networks. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (J. Comput. Biol., 2010)

MiDReG: A method of mining developmentally regulated genes using Boolean implications. - Debashis Sahoo; Jun Seita; Deepta Bhattacharya; Matthew A. Inlay; Irving L. Weissman; Sylvia K. Plevritis; David L. Dill (Proc. Natl. Acad. Sci. USA, 2010)

Discovering Biological Progression Underlying Microarray Samples. - Peng Qiu; Andrew J. Gentles; Sylvia K. Plevritis (PLoS Comput. Biol., 2011)

Reconstructing Directed Signed Gene Regulatory Network From Microarray Data. - Peng Qiu; Sylvia K. Plevritis (IEEE Trans. Biomed. Eng., 2011)

CytoSPADE: high-performance analysis and visualization of high-dimensional cytometry data. - Michael D. Linderman; Zach Bjornson; Erin F. Simonds; Peng Qiu; Robert V. Bruggner; Ketaki Sheode; Teresa H. Meng; Sylvia K. Plevritis; Garry P. Nolan (Bioinform., 2012)

Identifying Master Regulators of Cancer and Their Downstream Targets by Integrating Genomic and Epigenomic Features. - Olivier Gevaert; Sylvia K. Plevritis (Pacific Symposium on Biocomputing, 2013)

TreeVis: A MATLAB-based tool for tree visualization. - Peng Qiu; Sylvia K. Plevritis (Comput. Methods Programs Biomed., 2013)

CCAST: A Model-Based Gating Strategy to Isolate Homogeneous Subpopulations in a Heterogeneous Population of Single Cells. - Benedict Anchang; Mary T. Do; Xi Zhao; Sylvia K. Plevritis (PLoS Comput. Biol., 2014)

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. - Michael P. Snyder; Shin Lin; Amanda Posgai; Mark Atkinson; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Leslie Gaffney; Anna Hupalowska; Rahul Satija; Nils Gehlenborg; Jay Shendure; et al. (Nat., 2019)

Sparse discriminative latent characteristics for predicting cancer drug sensitivity from genomic features. - David A. Knowles; Gina Bouchard; Sylvia K. Plevritis (PLoS Comput. Biol., 2019)

Reflecting on 20 years of breast cancer modeling in CISNET: Recommendations for future cancer systems modeling efforts. - Amy Trentham-Dietz; Oguzhan Alagöz; Christina Chapman; Xuelin Huang; Jinani Jayasekera; Nicolien T. van Ravesteyn; Sandra J. Lee; Clyde B. Schechter; Jennifer M. Yeh; Sylvia K. Plevritis; Jeanne S. Mandelblatt; Breast Working Group of the Cancer Intervention; et al. (PLoS Comput. Biol., 2021)

A Dataset Generation Framework for Evaluating Megapixel Image Classifiers and Their Explanations. - Gautam Machiraju; Sylvia K. Plevritis; Parag Mallick (ECCV (12), 2022)

Visualization, benchmarking and characterization of nested single-cell heterogeneity as dynamic forest mixtures. - Benedict Anchang; Raul Mendez-Giraldez; Xiaojiang Xu; Trevor K. Archer; Qing Chen; Guang Hu; Sylvia K. Plevritis; Alison Anne Motsinger-Reif; Jian-Liang Li (Briefings Bioinform., 2022)