KnotGenome: a server to analyze entanglements of chromosomes. - Joanna I. Sulkowska; Szymon Niewieczerzal; Aleksandra I. Jarmolinska; Jonathan T. Siebert; Peter Virnau; Wanda Niemyska (Nucleic Acids Res., 2018)

The exclusive effects of chaperonin on the behavior of proteins with 52 knot. - Yani Zhao; Pawel Dabrowski-Tumanski; Szymon Niewieczerzal; Joanna I. Sulkowska (PLoS Comput. Biol., 2018)

GPCRsignal: webserver for analysis of the interface between G-protein-coupled receptors and their effector proteins by dynamics and mutations. - Przemyslaw Miszta; Pawel Pasznik; Szymon Niewieczerzal; Jakub Jakowiecki; Slawomir Filipek (Nucleic Acids Res., 2021)

GS-SMD server for steered molecular dynamics of peptide substrates in the active site of the γ-secretase complex. - Urszula Orzel; Pawel Pasznik; Przemyslaw Miszta; Marcin Lorkowski; Szymon Niewieczerzal; Jakub Jakowiecki; Slawomir Filipek (Nucleic Acids Res., 2023)