Implementation of GenePattern within the Stanford Microarray Database. - Jeremy Hubble; Janos Demeter; Heng Jin; Maria Mao; Michael Nitzberg; T. B. K. Reddy; Farrell Wymore; Zachariah K. Zachariah; Gavin Sherlock; Catherine A. Ball (Nucleic Acids Res., 2009)

TB database: an integrated platform for tuberculosis research. - T. B. K. Reddy; Robert Riley 002; Farrell Wymore; Phillip Montgomery; David DeCaprio; Reinhard Engels; Marcel Gellesch; Jeremy Hubble; Dennis Jen; Heng Jin; Michael Koehrsen; Lisa Larson; et al. (Nucleic Acids Res., 2009)

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification. - T. B. K. Reddy; Alex D. Thomas; Dimitri Stamatis; Jon Bertsch; Michelle Isbandi; Jakob Jansson; Jyothi Mallajosyula; Ioanna Pagani; Elizabeth A. Lobos; Nikos Kyrpides (Nucleic Acids Res., 2015)

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. - Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Olena Verezemska; Michelle Isbandi; Alex D. Thomas; Rida Ali; Kaushal Sharma; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2017)

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. - David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Ernest Szeto; Manoj Pillay; Jinghua Huang; Victor M. Markowitz; Torben Nielsen; Marcel Huntemann; T. B. K. Reddy; et al. (Nucleic Acids Res., 2017)

Genomes OnLine database (GOLD) v.7: updates and new features. - Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Hema Y. Katta; Alejandro Mojica; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2019)

IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes. - David Páez-Espino; Simon Roux; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; Marcel Huntemann; T. B. K. Reddy; Joan Carles Pons; Mercè Llabrés; Emiley A. Eloe-Fadrosh; Natalia N. Ivanova; et al. (Nucleic Acids Res., 2019)

Leveraging Ontologies within the National Microbiome Data Collaborative. - William D. Duncan; Faiza Ahmed; Fnu Anubhav; Jeffrey Baumes; Jonathan Beezley; Mark Borkum; Lisa M. Bramer; Shane Canon; Patrick S. G. Chain; Danielle Christianson; Yuri Corilo; Karen Davenport; et al. (ICBO, 2021)

Genomes OnLine Database (GOLD) v.8: overview and updates. - Supratim Mukherjee; Dimitri Stamatis; Jon Bertsch; Galina Ovchinnikova; Jagadish Chandrabose Sundaramurthi; Janey Lee; Mahathi Kandimalla; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2021)

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. - Simon Roux; David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T. B. K. Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y. Neches; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

Standardized naming of microbiome samples in Genomes OnLine Database. - Supratim Mukherjee; Galina Ovchinnikova; Dimitri Stamatis; Cindy Tianqing Li; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Database J. Biol. Databases Curation, 2023)

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. - Antonio Pedro Camargo; Stephen Nayfach; I-Min A. Chen; Krishnaveni Palaniappan; Anna Ratner; Ken Chu; Stephan Ritter; T. B. K. Reddy; Supratim Mukherjee; Frederik Schulz; Lee Call; Russell Y. Neches; et al. (Nucleic Acids Res., 2023)

The IMG/M data management and analysis system v.7: content updates and new features. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Cody Webb; Dongying Wu; Neha Varghese; T. B. K. Reddy; et al. (Nucleic Acids Res., 2023)

Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9. - Supratim Mukherjee; Dimitri Stamatis; Cindy Tianqing Li; Galina Ovchinnikova; Jon Bertsch; Jagadish Chandrabose Sundaramurthi; Mahathi Kandimalla; Paul A. Nicolopoulos; Alessandro Favognano; I-Min A. Chen; Nikos Kyrpides; T. B. K. Reddy (Nucleic Acids Res., 2023)

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies. - Yu-Ning Huang; Michael I. Love; Cynthia Flaire Ronkowski; Dhrithi Deshpande; Lynn M. Schriml; Annie Wong-Beringer; Barend Mons; Russell Corbett-Detig; Christopher I Hunter; Jason H. Moore; Lana X. Garmire; T. B. K. Reddy; et al. (CoRR, 2024)