Merged consensus clustering to assess and improve class discovery with microarray data. - T. Ian Simpson; J. Douglas Armstrong; Andrew P. Jarman (BMC Bioinform., 2010)

Bio: : Homology: : InterologWalk - A Perl module to build putative protein-protein interaction networks through interolog mapping. - Giuseppe Gallone; T. Ian Simpson; J. Douglas Armstrong; Andrew P. Jarman (BMC Bioinform., 2011)

Creation and evaluation of full-text literature-derived, feature-weighted disease models of genetically determined developmental disorders. - Thabo M. Yates; A. Laine; Jennifer Campbell; David R. FitzPatrick; T. Ian Simpson (Database J. Biol. Databases Curation, 2022)

Edinburgh Clinical NLP at MEDIQA-CORR 2024: Guiding Large Language Models with Hints. - Aryo Gema; Chaeeun Lee; Pasquale Minervini; Luke Daines; T. Ian Simpson; Beatrice Alex (ClinicalNLP@NAACL, 2024)

Comparative Analyses of Multilingual Drug Entity Recognition Systems for Clinical Case Reports In Cardiology. - Chaeeun Lee; T. Ian Simpson; Joram M. Posma; Antoine D. Lain (CLEF (Working Notes), 2024)

Classification of Genetic Developmental Disorders in the Peer-Reviewed Literature using biomedical ontologies. - T. Michael Yates; T. Ian Simpson (ICBO, 2024)

The Ontoverse: Democratising Access to Knowledge Graph-based Data Through a Cartographic Interface. - Johannes Zimmermann; Dariusz Wiktorek; Thomas Meusburger; Miquel Monge-Dalmau; Antonio Fabregat; Alexander Jarasch; Günter Schmidt 001; Jorge S. Reis-Filho; T. Ian Simpson (CoRR, 2024)

An integrative network approach for longitudinal stratification in Parkinson's disease. - Barry Ryan; Riccardo Marioni; T. Ian Simpson (PLoS Comput. Biol., 2025)

KU AIGEN ICL EDI@BC8 Track 3: Advancing Phenotype Named Entity Recognition and Normalization for Dysmorphology Physical Examination Reports. - Hajung Kim; Chanhwi Kim; Jiwoong Sohn; Tim Beck; Marek Rei; Sunkyu Kim; T. Ian Simpson; Joram M. Posma; Antoine Lain; Mujeen Sung; Jaewoo Kang (CoRR, 2025)

Community Detection in Multimodal Data: A Similarity Network Perspective. - Aidan Marnane; T. Ian Simpson (CoRR, 2025)

GNN-Suite: a Graph Neural Network Benchmarking Framework for Biomedical Informatics. - Sebestyén Kamp; Giovanni Stracquadanio; T. Ian Simpson (CoRR, 2025)