GRAMPS - A graphics language interpreter for real-time, interactive, three-dimensional picture editing and animation. - T. J. O'Donnell; Arthur J. Olson (SIGGRAPH, 1981)

Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives. - Richard K. Belew; Stefano Forli; David S. Goodsell; T. J. O'Donnell; Arthur J. Olson (J. Chem. Inf. Model., 2016)

chemalot and chemalot_knime: Command line programs as workflow tools for drug discovery. - Man-Ling Lee; Ignacio Aliagas; Jianwen A. Feng; Thomas R. Gabriel; T. J. O'Donnell; Benjamin D. Sellers; Bernd Wiswedel; Alberto Gobbi (J. Cheminformatics, 2017)