We stand with Ukraine

We stand with Ukraine

T. M. Murali

Orcid: 0000-0003-3688-4672

Affiliations:

Virginia Tech, Blacksburg, VA, USA
Boston University, MA, USA (2001 - 2003)
Compaq's Cambridge Research Lab, MA, USA (1999 - 2001)
Stanford University, CA, USA (until 1999)
Brown University, Provicence, RI, USA (former)
Duke University, Durham, NC, USA (former)

According to our database¹, T. M. Murali authored at least 56 papers between 1996 and 2022.

Collaborative distances:

Dijkstra number² of three.
Erdős number³ of three.

Timeline

Legend:

Book

In proceedings

Article

PhD thesis

Dataset

Other

Links

Online presence:

On csauthors.net:

Bibliography

2022

Flud: A Hybrid Crowd-Algorithm Approach for Visualizing Biological Networks.

[BibT_eX]

[DOI]

Aditya Bharadwaj

,

,

,

,

ACM Trans. Comput. Hum. Interact., 2022

2021

Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019).

[BibT_eX]

[DOI]

,

,

Giri Narasimhan

,

Sanguthevar Rajasekaran

,

,

Alexander Zelikovsky

J. Comput. Biol., 2021

Accurate and efficient gene function prediction using a multi-bacterial network.

[BibT_eX]

[DOI]

,

,

Bioinform., 2021

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome.

[BibT_eX]

[DOI]

Meghana Kshirsagar

,

,

Michael D. Ward

,

,

,

Juan M. Lavista Ferres

,

Gregory R. Bowman

,

Judith Klein-Seetharaman

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2020

How to build regulatory networks from single-cell gene expression data.

[BibT_eX]

[DOI]

,

Amogh P. Jalihal

,

,

Aditya Bharadwaj

,

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019

Hypergraph-based connectivity measures for signaling pathway topologies.

[BibT_eX]

[DOI]

Nicholas Franzese

,

,

,

PLoS Comput. Biol., 2019

Reconstructing signaling pathways using regular language constrained paths.

[BibT_eX]

[DOI]

Mitchell J. Wagner

,

,

Bioinform., 2019

2018

Guest Editorial.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Large-scale protein function prediction using heterogeneous ensembles.

[BibT_eX]

[DOI]

,

,

,

,

F1000Research, 2018

Automating the PathLinker app for Cytoscape.

[BibT_eX]

[DOI]

,

,

F1000Research, 2018

CrossPlan: systematic planning of genetic crosses to validate mathematical models.

[BibT_eX]

[DOI]

,

,

Pavel K. Brazhnik

,

Nicholas Franzese

,

,

,

Bioinform., 2018

CrowdLayout: Crowdsourced Design and Evaluation of Biological Network Visualizations.

[BibT_eX]

[DOI]

,

,

,

Proceedings of the 2018 CHI Conference on Human Factors in Computing Systems, 2018

Efficient Synthesis of Mutants Using Genetic Crosses.

[BibT_eX]

[DOI]

,

Amogh P. Jalihal

,

,

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models.

[BibT_eX]

[DOI]

,

,

Pavel K. Kraikivski

,

Nicholas Franzese

,

,

,

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Pathway Analysis with Signaling Hypergraphs.

[BibT_eX]

[DOI]

,

,

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

XTalkDB: a database of signaling pathway crosstalk.

[BibT_eX]

[DOI]

,

,

Allison N. Tegge

,

Aditya Bharadwaj

,

Nucleic Acids Res., 2017

GraphSpace: stimulating interdisciplinary collaborations in network biology.

[BibT_eX]

[DOI]

Aditya Bharadwaj

,

,

,

Allison N. Tegge

,

Christopher L. Poirel

,

Pavel K. Brazhnik

,

,

,

,

,

,

Bioinform., 2017

2016

Xtalk: a path-based approach for identifying crosstalk between signaling pathways.

[BibT_eX]

[DOI]

Allison N. Tegge

,

,

Bioinform., 2016

Unstable Communities in Network Ensembles.

[BibT_eX]

[DOI]

,

Steve T. K. Jan

,

,

B. Aditya Prakash

,

Proceedings of the 2016 SIAM International Conference on Data Mining, 2016

2015

Mining Unstable Communities from Network Ensembles.

[BibT_eX]

[DOI]

,

Steve T. K. Jan

,

,

B. Aditya Prakash

,

Proceedings of the IEEE International Conference on Data Mining Workshop, 2015

2014

Pathway analysis with signaling hypergraphs.

[BibT_eX]

[DOI]

,

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

GraphSpace: sharing and collaborating through networks on the web.

[BibT_eX]

[DOI]

,

,

,

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Reverse Engineering Molecular Hypergraphs.

[BibT_eX]

[DOI]

,

Christopher L. Poirel

,

,

,

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Top-Down Network Analysis to Drive Bottom-Up Modeling of Physiological Processes.

[BibT_eX]

[DOI]

Christopher L. Poirel

,

Richard R. Rodrigues

,

Katherine C. Chen

,

,

J. Comput. Biol., 2013

Summarizing cellular responses as biological process networks.

[BibT_eX]

[DOI]

Christopher D. Lasher

,

Padmavathy Rajagopalan

,

BMC Syst. Biol., 2013

Reconciling differential gene expression data with molecular interaction networks.

[BibT_eX]

[DOI]

Christopher L. Poirel

,

,

Richard R. Rodrigues

,

,

Jacqueline R. Addesa

,

Bioinform., 2013

2012

Guest Editor's Introduction: Computationally Driven Experimental Biology.

[BibT_eX]

[DOI]

Computer, 2012

Sensitive detection of pathway perturbations in cancers.

[BibT_eX]

[DOI]

Corban G. Rivera

,

,

BMC Bioinform., 2012

Reverse engineering molecular hypergraphs.

[BibT_eX]

[DOI]

,

Christopher L. Poirel

,

,

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Network-Based Prediction and Analysis of HIV Dependency Factors.

[BibT_eX]

[DOI]

,

Matthew D. Dyer

,

,

,

Michael G. Katze

PLoS Comput. Biol., 2011

Network-based functional enrichment.

[BibT_eX]

[DOI]

Christopher L. Poirel

,

Clifford Conley Owens III

,

BMC Bioinform., 2011

Sensitive detection of pathway perturbations in cancers: extended abstract.

[BibT_eX]

[DOI]

Corban G. Rivera

,

,

Proceedings of the ACM International Conference on Bioinformatics, 2011

2009

PIG - the pathogen interaction gateway.

[BibT_eX]

[DOI]

,

Matthew D. Dyer

,

,

Bruno W. S. Sobral

Nucleic Acids Res., 2009

Capturing truthiness: mining truth tables in binary datasets.

[BibT_eX]

[DOI]

Clifford Conley Owens III

,

,

Naren Ramakrishnan

Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper.

[BibT_eX]

[DOI]

Corban G. Rivera

,

Proceedings of the Bioinformatics and Computational Biology, 2009

2008

Compositional mining of multirelational biological datasets.

[BibT_eX]

[DOI]

,

,

Naren Ramakrishnan

ACM Trans. Knowl. Discov. Data, 2008

Network Legos: Building Blocks of Cellular Wiring Diagrams.

[BibT_eX]

[DOI]

,

Corban G. Rivera

J. Comput. Biol., 2008

2007

Computational prediction of host-pathogen protein-protein interactions.

[BibT_eX]

[DOI]

Matthew D. Dyer

,

,

Bruno W. S. Sobral

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

VIRGO: computational prediction of gene functions.

[BibT_eX]

[DOI]

Naveed Massjouni

,

Corban G. Rivera

,

Nucleic Acids Res., 2006

XcisClique: analysis of regulatory bicliques.

[BibT_eX]

[DOI]

,

Cecilia Vasquez-Robinet

,

Lenwood S. Heath

,

,

BMC Bioinform., 2006

Automatic layout and visualization of biclusters.

[BibT_eX]

[DOI]

Gregory A. Grothaus

,

,

Algorithms Mol. Biol., 2006

2003

RankGene: identification of diagnostic genes based on expression data.

[BibT_eX]

[DOI]

,

,

Vladimir Pavlovic

,

Michael Schaffer

,

Bioinform., 2003

Extracting Conserved Gene Expression Motifs from Gene Expression Data.

[BibT_eX]

[DOI]

,

Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002

New Similarity Measures between Polylines with Applications to Morphing and Polygon Sweeping.

[BibT_eX]

[DOI]

,

Leonidas J. Guibas

,

Sariel Har-Peled

,

Joseph S. B. Mitchell

,

Discret. Comput. Geom., 2002

A Monte Carlo algorithm for fast projective clustering.

[BibT_eX]

[DOI]

Cecilia Magdalena Procopiuc

,

,

Pankaj K. Agarwal

,

Proceedings of the 2002 ACM SIGMOD International Conference on Management of Data, 2002

2001

Morphing between polylines.

[BibT_eX]

[DOI]

,

Sariel Har-Peled

,

Leonidas J. Guibas

,

Proceedings of the Twelfth Annual Symposium on Discrete Algorithms, 2001

2000

Binary Space Partitions for Fat Rectangles.

[BibT_eX]

[DOI]

Pankaj K. Agarwal

,

Edward F. Grove

,

,

Jeffrey Scott Vitter

SIAM J. Comput., 2000

Cylindrical static and kinetic binary space partitions.

[BibT_eX]

[DOI]

Pankaj K. Agarwal

,

Leonidas J. Guibas

,

,

Jeffrey Scott Vitter

Comput. Geom., 2000

Sweeping simple polygons with a chain of guards.

[BibT_eX]

[DOI]

,

Leonidas J. Guibas

,

Sariel Har-Peled

,

,

Joseph S. B. Mitchell

,

Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

1999

Efficient Hidden-Surface Removal in Theory and Practice.

[BibT_eX]

[DOI]

PhD thesis, 1999

The Object Complexity Model for Hidden-Surface Removal.

[BibT_eX]

[DOI]

Edward F. Grove

,

,

Jeffrey Scott Vitter

Int. J. Comput. Geom. Appl., 1999

1998

I/O-Efficient Algorithms for Contour-line Extraction and Planar Graph Blocking (Extended Abstract).

[BibT_eX]

[DOI]

Pankaj K. Agarwal

,

,

,

Kasturi R. Varadarajan

,

Jeffrey Scott Vitter

Proceedings of the Ninth Annual ACM-SIAM Symposium on Discrete Algorithms, 1998

Constructing Binary Space Partitions for Orthogonal Rectabgles in Practice.

[BibT_eX]

[DOI]

,

Pankaj K. Agarwal

,

Jeffrey Scott Vitter

Proceedings of the Algorithms, 1998

1997

Consistent Solid and Boundary Representations from Arbitrary Polygonal Data.

[BibT_eX]

[DOI]

,

Thomas A. Funkhouser

Proceedings of the 1997 Symposium on Interactive 3D Graphics, 1997

Practical Techniques for Constructing Binary Space Partitions for Orthogonal Rectangles.

[BibT_eX]

[DOI]

Pankaj K. Agarwal

,

,

Jeffrey Scott Vitter

Proceedings of the Thirteenth Annual Symposium on Computational Geometry, 1997

1996

Binary Search Partitions for Fat Rectangles.

[BibT_eX]

[DOI]

Pankaj K. Agarwal

,

Edward F. Grove

,

,

Jeffrey Scott Vitter

Proceedings of the 37th Annual Symposium on Foundations of Computer Science, 1996

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