T. M. Murali

According to our database1, T. M. Murali authored at least 50 papers between 1996 and 2020.

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Bibliography

2020
How to build regulatory networks from single-cell gene expression data.
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2019
Hypergraph-based connectivity measures for signaling pathway topologies.
PLoS Comput. Biol., 2019

Flud: a hybrid crowd-algorithm approach for visualizing biological networks.
CoRR, 2019

Reconstructing signaling pathways using regular language constrained paths.
Bioinform., 2019

2018
Guest Editorial.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

CrossPlan: systematic planning of genetic crosses to validate mathematical models.
Bioinform., 2018

CrowdLayout: Crowdsourced Design and Evaluation of Biological Network Visualizations.
Proceedings of the 2018 CHI Conference on Human Factors in Computing Systems, 2018

Efficient Synthesis of Mutants Using Genetic Crosses.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Pathway Analysis with Signaling Hypergraphs.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

XTalkDB: a database of signaling pathway crosstalk.
Nucleic Acids Res., 2017

GraphSpace: stimulating interdisciplinary collaborations in network biology.
Bioinform., 2017

2016
Xtalk: a path-based approach for identifying crosstalk between signaling pathways.
Bioinform., 2016

Unstable Communities in Network Ensembles.
Proceedings of the 2016 SIAM International Conference on Data Mining, 2016

2015
Mining Unstable Communities from Network Ensembles.
Proceedings of the IEEE International Conference on Data Mining Workshop, 2015

2014
Pathway analysis with signaling hypergraphs.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

GraphSpace: sharing and collaborating through networks on the web.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Reverse Engineering Molecular Hypergraphs.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Top-Down Network Analysis to Drive Bottom-Up Modeling of Physiological Processes.
J. Comput. Biol., 2013

Summarizing cellular responses as biological process networks.
BMC Syst. Biol., 2013

Reconciling differential gene expression data with molecular interaction networks.
Bioinform., 2013

2012
Guest Editor's Introduction: Computationally Driven Experimental Biology.
Computer, 2012

Sensitive detection of pathway perturbations in cancers.
BMC Bioinform., 2012

Reverse engineering molecular hypergraphs.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Network-Based Prediction and Analysis of HIV Dependency Factors.
PLoS Comput. Biol., 2011

Network-based functional enrichment.
BMC Bioinform., 2011

Sensitive detection of pathway perturbations in cancers: extended abstract.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2009
PIG - the pathogen interaction gateway.
Nucleic Acids Res., 2009

Capturing truthiness: mining truth tables in binary datasets.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009

Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper.
Proceedings of the Bioinformatics and Computational Biology, 2009

2008
Compositional mining of multirelational biological datasets.
ACM Trans. Knowl. Discov. Data, 2008

Network Legos: Building Blocks of Cellular Wiring Diagrams.
J. Comput. Biol., 2008

2007
Computational prediction of host-pathogen protein-protein interactions.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
VIRGO: computational prediction of gene functions.
Nucleic Acids Res., 2006

XcisClique: analysis of regulatory bicliques.
BMC Bioinform., 2006

Automatic layout and visualization of biclusters.
Algorithms Mol. Biol., 2006

2003
RankGene: identification of diagnostic genes based on expression data.
Bioinform., 2003

Extracting Conserved Gene Expression Motifs from Gene Expression Data.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

2002
New Similarity Measures between Polylines with Applications to Morphing and Polygon Sweeping.
Discret. Comput. Geom., 2002

A Monte Carlo algorithm for fast projective clustering.
Proceedings of the 2002 ACM SIGMOD International Conference on Management of Data, 2002

2001
Morphing between polylines.
Proceedings of the Twelfth Annual Symposium on Discrete Algorithms, 2001

2000
Binary Space Partitions for Fat Rectangles.
SIAM J. Comput., 2000

Cylindrical static and kinetic binary space partitions.
Comput. Geom., 2000

Sweeping simple polygons with a chain of guards.
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

1999
The Object Complexity Model for Hidden-Surface Removal.
Int. J. Comput. Geom. Appl., 1999

1998
I/O-Efficient Algorithms for Contour-line Extraction and Planar Graph Blocking (Extended Abstract).
Proceedings of the Ninth Annual ACM-SIAM Symposium on Discrete Algorithms, 1998

Constructing Binary Space Partitions for Orthogonal Rectabgles in Practice.
Proceedings of the Algorithms, 1998

1997
Consistent Solid and Boundary Representations from Arbitrary Polygonal Data.
Proceedings of the 1997 Symposium on Interactive 3D Graphics, 1997

Practical Techniques for Constructing Binary Space Partitions for Orthogonal Rectangles.
Proceedings of the Thirteenth Annual Symposium on Computational Geometry, 1997

1996
Binary Search Partitions for Fat Rectangles.
Proceedings of the 37th Annual Symposium on Foundations of Computer Science, 1996


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