Binary Search Partitions for Fat Rectangles. - Pankaj K. Agarwal; Edward F. Grove; T. M. Murali 001; Jeffrey Scott Vitter (FOCS, 1996)

Practical Techniques for Constructing Binary Space Partitions for Orthogonal Rectangles. - Pankaj K. Agarwal; T. M. Murali 001; Jeffrey Scott Vitter (SCG, 1997)

Consistent Solid and Boundary Representations from Arbitrary Polygonal Data. - T. M. Murali 001; Thomas A. Funkhouser (SI3D, 1997)

Constructing Binary Space Partitions for Orthogonal Rectabgles in Practice. - T. M. Murali 001; Pankaj K. Agarwal; Jeffrey Scott Vitter (ESA, 1998)

I/O-Efficient Algorithms for Contour-line Extraction and Planar Graph Blocking (Extended Abstract). - Pankaj K. Agarwal; Lars Arge; T. M. Murali 001; Kasturi R. Varadarajan; Jeffrey Scott Vitter (SODA, 1998)

The Object Complexity Model for Hidden-Surface Removal. - Edward F. Grove; T. M. Murali 001; Jeffrey Scott Vitter (Int. J. Comput. Geom. Appl., 1999)

Efficient Hidden-Surface Removal in Theory and Practice. - T. M. Murali 001 (1999)

Sweeping simple polygons with a chain of guards. - Alon Efrat; Leonidas J. Guibas; Sariel Har-Peled; David C. Lin; Joseph S. B. Mitchell; T. M. Murali 001 (SODA, 2000)

Cylindrical static and kinetic binary space partitions. - Pankaj K. Agarwal; Leonidas J. Guibas; T. M. Murali 001; Jeffrey Scott Vitter (Comput. Geom., 2000)

Binary Space Partitions for Fat Rectangles. - Pankaj K. Agarwal; Edward F. Grove; T. M. Murali 001; Jeffrey Scott Vitter (SIAM J. Comput., 2000)

Morphing between polylines. - Alon Efrat; Sariel Har-Peled; Leonidas J. Guibas; T. M. Murali 001 (SODA, 2001)

A Monte Carlo algorithm for fast projective clustering. - Cecilia Magdalena Procopiuc; Michael Jones; Pankaj K. Agarwal; T. M. Murali 001 (SIGMOD Conference, 2002)

New Similarity Measures between Polylines with Applications to Morphing and Polygon Sweeping. - Alon Efrat; Leonidas J. Guibas; Sariel Har-Peled; Joseph S. B. Mitchell; T. M. Murali 001 (Discret. Comput. Geom., 2002)

Extracting Conserved Gene Expression Motifs from Gene Expression Data. - T. M. Murali 001; Simon Kasif (Pacific Symposium on Biocomputing, 2003)

RankGene: identification of diagnostic genes based on expression data. - Yang Su; T. M. Murali 001; Vladimir Pavlovic 001; Michael Schaffer; Simon Kasif (Bioinform., 2003)

Automatic layout and visualization of biclusters. - Gregory A. Grothaus; Adeel Mufti; T. M. Murali 001 (Algorithms Mol. Biol., 2006)

XcisClique: analysis of regulatory bicliques. - Amrita Pati; Cecilia Vasquez-Robinet; Lenwood S. Heath; Ruth Grene; T. M. Murali 001 (BMC Bioinform., 2006)

VIRGO: computational prediction of gene functions. - Naveed Massjouni; Corban G. Rivera; T. M. Murali 001 (Nucleic Acids Res., 2006)

Computational prediction of host-pathogen protein-protein interactions. - Matthew D. Dyer; T. M. Murali 001; Bruno W. S. Sobral (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Network Legos: Building Blocks of Cellular Wiring Diagrams. - T. M. Murali 001; Corban G. Rivera (J. Comput. Biol., 2008)

Compositional mining of multirelational biological datasets. - Ying Jin 003; T. M. Murali 001; Naren Ramakrishnan (ACM Trans. Knowl. Discov. Data, 2008)

Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper. - Corban G. Rivera; T. M. Murali 001 (BICoB, 2009)

Capturing truthiness: mining truth tables in binary datasets. - Clifford Conley Owens III; T. M. Murali 001; Naren Ramakrishnan (SAC, 2009)

PIG - the pathogen interaction gateway. - Tim Driscoll; Matthew D. Dyer; T. M. Murali 001; Bruno W. S. Sobral (Nucleic Acids Res., 2009)

Sensitive detection of pathway perturbations in cancers: extended abstract. - Corban G. Rivera; Brett M. Tyler; T. M. Murali 001 (BCB, 2011)

Network-based functional enrichment. - Christopher L. Poirel; Clifford Conley Owens III; T. M. Murali 001 (BMC Bioinform., 2011)

Network-Based Prediction and Analysis of HIV Dependency Factors. - T. M. Murali 001; Matthew D. Dyer; David Badger; Brett M. Tyler; Michael G. Katze (PLoS Comput. Biol., 2011)

Reverse engineering molecular hypergraphs. - Ahsanur Rahman 001; Christopher L. Poirel; David Badger; T. M. Murali 001 (BCB, 2012)

Sensitive detection of pathway perturbations in cancers. - Corban G. Rivera; Brett M. Tyler; T. M. Murali 001 (BMC Bioinform., 2012)

Guest Editor's Introduction: Computationally Driven Experimental Biology. - T. M. Murali 001 (Computer, 2012)

Reconciling differential gene expression data with molecular interaction networks. - Christopher L. Poirel; Ahsanur Rahman 001; Richard R. Rodrigues; Arjun Krishnan; Jacqueline R. Addesa; T. M. Murali 001 (Bioinform., 2013)

Summarizing cellular responses as biological process networks. - Christopher D. Lasher; Padmavathy Rajagopalan; T. M. Murali 001 (BMC Syst. Biol., 2013)

Top-Down Network Analysis to Drive Bottom-Up Modeling of Physiological Processes. - Christopher L. Poirel; Richard R. Rodrigues; Katherine C. Chen; John J. Tyson; T. M. Murali 001 (J. Comput. Biol., 2013)

Reverse Engineering Molecular Hypergraphs. - Ahsanur Rahman 001; Christopher L. Poirel; David Badger; Craig Estep; T. M. Murali 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

GraphSpace: sharing and collaborating through networks on the web. - Craig Estep; Jaeil Yi; Anna M. Ritz; T. M. Murali 001 (BCB, 2014)

Pathway analysis with signaling hypergraphs. - Anna M. Ritz; T. M. Murali 001 (BCB, 2014)

Mining Unstable Communities from Network Ensembles. - Ahsanur Rahman 001; Steve T. K. Jan; Hyunju Kim; B. Aditya Prakash; T. M. Murali 001 (ICDM Workshops, 2015)

Unstable Communities in Network Ensembles. - Ahsanur Rahman 001; Steve T. K. Jan; Hyunju Kim; B. Aditya Prakash; T. M. Murali 001 (SDM, 2016)

Xtalk: a path-based approach for identifying crosstalk between signaling pathways. - Allison N. Tegge; Nicholas Sharp; T. M. Murali 001 (Bioinform., 2016)

GraphSpace: stimulating interdisciplinary collaborations in network biology. - Aditya Bharadwaj; Divit P. Singh; Anna M. Ritz; Allison N. Tegge; Christopher L. Poirel; Pavel K. Brazhnik; Neil Adames; Kurt Luther; Shiv D. Kale; Jean Peccoud; John J. Tyson; T. M. Murali 001 (Bioinform., 2017)

XTalkDB: a database of signaling pathway crosstalk. - Sarah A. Sam; Joelle Teel; Allison N. Tegge; Aditya Bharadwaj; T. M. Murali 001 (Nucleic Acids Res., 2017)

Pathway Analysis with Signaling Hypergraphs. - Anna M. Ritz; Brendan Avent; T. M. Murali 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. - Aditya Pratapa; Neil Adames; Pavel K. Kraikivski; Nicholas Franzese; John J. Tyson; Jean Peccoud; T. M. Murali 001 (BCB, 2018)

Efficient Synthesis of Mutants Using Genetic Crosses. - Aditya Pratapa; Amogh P. Jalihal; S. S. Ravi; T. M. Murali 001 (BCB, 2018)

CrowdLayout: Crowdsourced Design and Evaluation of Biological Network Visualizations. - Divit P. Singh; Lee Lisle; T. M. Murali 001; Kurt Luther (CHI, 2018)

CrossPlan: systematic planning of genetic crosses to validate mathematical models. - Aditya Pratapa; Neil Adames; Pavel K. Brazhnik; Nicholas Franzese; John J. Tyson; Jean Peccoud; T. M. Murali 001 (Bioinform., 2018)

Automating the PathLinker app for Cytoscape. - Li Jun Huang; Jeffrey N. Law; T. M. Murali 001 (F1000Research, 2018)

Large-scale protein function prediction using heterogeneous ensembles. - Linhua Wang; Jeffrey N. Law; Shiv D. Kale; T. M. Murali 001; Gaurav Pandey (F1000Research, 2018)

Guest Editorial. - T. M. Murali 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2018)

Reconstructing signaling pathways using regular language constrained paths. - Mitchell J. Wagner; Aditya Pratapa; T. M. Murali 001 (Bioinform., 2019)

Hypergraph-based connectivity measures for signaling pathway topologies. - Nicholas Franzese; Adam Groce; T. M. Murali 001; Anna M. Ritz (PLoS Comput. Biol., 2019)

How to build regulatory networks from single-cell gene expression data. - Aditya Pratapa; Amogh P. Jalihal; Jeffrey N. Law; Aditya Bharadwaj; T. M. Murali 001 (BCB, 2020)

Protein sequence models for prediction and comparative analysis of the SARS-CoV-2 - human interactome. - Meghana Kshirsagar 001; Nure Tasnina; Michael D. Ward; Jeffrey N. Law; T. M. Murali 001; Juan M. Lavista Ferres; Gregory R. Bowman; Judith Klein-Seetharaman (PSB, 2021)

Accurate and efficient gene function prediction using a multi-bacterial network. - Jeffrey N. Law; Shiv D. Kale; T. M. Murali 001 (Bioinform., 2021)

Special Issue: 9th International Computational Advances in Bio and Medical Sciences (ICCABS 2019). - Ion I. Mandoiu; T. M. Murali 001; Giri Narasimhan; Sanguthevar Rajasekaran; Pavel Skums; Alexander Zelikovsky (J. Comput. Biol., 2021)

Flud: A Hybrid Crowd-Algorithm Approach for Visualizing Biological Networks. - Aditya Bharadwaj; David Gwizdala; Yoonjin Kim; Kurt Luther; T. M. Murali 001 (ACM Trans. Comput. Hum. Interact., 2022)