Sliding of Proteins Non-specifically Bound to DNA: Brownian Dynamics Studies with Coarse-Grained Protein and DNA Models. - Tadashi Ando; Jeffrey Skolnick (PLoS Comput. Biol., 2014)

GENESIS 1.1: A hybrid-parallel molecular dynamics simulator with enhanced sampling algorithms on multiple computational platforms. - Chigusa Kobayashi; Jaewoon Jung; Yasuhiro Matsunaga; Takaharu Mori; Tadashi Ando; Koichi Tamura; Motoshi Kamiya; Yuji Sugita (J. Comput. Chem., 2017)

Adaptive Dynamics Simulation of Interference Phenomenon for Physical and Biological Systems. - Tadashi Ando; Masanari Asano; Andrei Yu. Khrennikov; Takashi Matsuoka; Ichiro Yamato (Entropy, 2023)

Elucidation of productive alanine recognition mechanism by Escherichia coli alanyl-tRNA synthetase. - Mayu Onoguchi; Riku Otsuka; Miki Koyama; Tadashi Ando; Hiromi Mutsuro-Aoki; Takuya Umehara; Koji Tamura (Biosyst., 2024)