DNA Data Bank of Japan (DDBJ) for genome scale research in life science. - Yoshio Tateno; Tadashi Imanishi; Satoru Miyazaki; Kaoru Fukami-Kobayashi; Naruya Saitou; Hideaki Sugawara; Takashi Gojobori (Nucleic Acids Res., 2002)

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. - Motohiko Tanino; Marie-Anne Debily; Takuro Tamura; Teruyoshi Hishiki; Osamu Ogasawara; Katsuji Murakawa; Shoko Kawamoto; Kouichi Itoh; Shinya Watanabe; Sandro José de Souza; Sandrine Imbeaud; Esther Graudens; et al. (Nucleic Acids Res., 2005)

The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. - Hajime Ohyanagi; Tsuyoshi Tanaka; Hiroaki Sakai; Yasumasa Shigemoto; Kaori Yamaguchi; Takuya Habara; Yasuyuki Fujii; Baltazar A. Antonio; Yoshiaki Nagamura; Tadashi Imanishi; Kazuho Ikeo; Takeshi Itoh; et al. (Nucleic Acids Res., 2006)

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB. - Chisato Yamasaki; Hiroaki Kawashima; Fusano Todokoro; Yasuhiro Imamizu; Makoto Ogawa; Motohiko Tanino; Takeshi Itoh; Takashi Gojobori; Tadashi Imanishi (Nucleic Acids Res., 2006)

H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. - Jun-ichi Takeda; Yutaka Suzuki; Mitsuteru Nakao; Tsuyoshi Kuroda; Sumio Sugano; Takashi Gojobori; Tadashi Imanishi (Nucleic Acids Res., 2007)

Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences. - Hong-Woo Chun; Chisato Yamasaki; Naomi Saichi; Masayuki Tanaka 009; Teruyoshi Hishiki; Tadashi Imanishi; Takashi Gojobori; Jin-Dong Kim; Jun'ichi Tsujii; Toshihisa Takagi (BioNLP, 2008)

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. - Akihiro Matsuya; Ryuichi Sakate; Yoshihiro Kawahara; Kanako O. Koyanagi; Yoshiharu Sato; Yasuyuki Fujii; Chisato Yamasaki; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Kaori Yamaguchi; Toshinori Endo; et al. (Nucleic Acids Res., 2008)

G-compass: a web-based comparative genome browser between human and other vertebrate genomes. - Yoshihiro Kawahara; Ryuichi Sakate; Akihiro Matsuya; Katsuhiko Murakami; Yoshiharu Sato; Hao Zhang; Takashi Gojobori; Takeshi Itoh; Tadashi Imanishi (Bioinform., 2009)

Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases. - Tadashi Imanishi; Hajime Nakaoka (Nucleic Acids Res., 2009)

VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts. - Makoto K. Shimada; Ryuzou Matsumoto; Yosuke Hayakawa; Ryoko Sanbonmatsu; Craig Gough; Yumi Yamaguchi-Kabata; Chisato Yamasaki; Tadashi Imanishi; Takashi Gojobori (Nucleic Acids Res., 2009)

H-DBAS: human-transcriptome database for alternative splicing: update 2010. - Jun-ichi Takeda; Yutaka Suzuki; Ryuichi Sakate; Yoshiharu Sato; Takashi Gojobori; Tadashi Imanishi; Sumio Sugano (Nucleic Acids Res., 2010)

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts. - Chisato Yamasaki; Katsuhiko Murakami; Jun-ichi Takeda; Yoshiharu Sato; Akiko Ogura Noda; Ryuichi Sakate; Takuya Habara; Hajime Nakaoka; Fusano Todokoro; Akihiro Matsuya; Tadashi Imanishi; Takashi Gojobori (Nucleic Acids Res., 2010)

Towards BioDBcore: a community-defined information specification for biological databases. - Pascale Gaudet; Amos Bairoch; Dawn Field; Susanna-Assunta Sansone; Chris F. Taylor; Teresa K. Attwood; Alex Bateman; Judith A. Blake; Carol J. Bult; J. Michael Cherry; Rex L. Chisholm; Guy Cochrane; et al. (Database J. Biol. Databases Curation, 2011)

CIPRO 2.5: Ciona intestinalis protein database, a unique integrated repository of large-scale omics data, bioinformatic analyses and curated annotation, with user rating and reviewing functionality. - Toshinori Endo; Keisuke Ueno; Kouki Yonezawa; Katsuhiko Mineta; Kohji Hotta; Yutaka Satou; Lixy Yamada; Michio Ogasawara; Hiroki Takahashi; Ayako Nakajima; Mia Nakachi; Mamoru Nomura; et al. (Nucleic Acids Res., 2011)

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset. - Shingo Kikugawa; Kensaku Nishikata; Katsuhiko Murakami; Yoshiharu Sato; Mami Suzuki; Md. Altaf-Ul-Amin; Shigehiko Kanaya; Tadashi Imanishi (BMC Syst. Biol., 2012)

RAvariome: a genetic risk variants database for rheumatoid arthritis based on assessment of reproducibility between or within human populations. - Yoko Nagai; Tadashi Imanishi (Database J. Biol. Databases Curation, 2013)

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery. - Jun-ichi Takeda; Chisato Yamasaki; Katsuhiko Murakami; Yoko Nagai; Miho Sera; Yuichiro Hara; Nobuo Obi; Takuya Habara; Takashi Gojobori; Tadashi Imanishi (Nucleic Acids Res., 2013)

VaDE: a manually curated database of reproducible associations between various traits and human genomic polymorphisms. - Yoko Nagai; Yasuko Takahashi; Tadashi Imanishi (Nucleic Acids Res., 2015)

Nucleotide Archival Format (NAF) enables efficient lossless reference-free compression of DNA sequences. - Kirill Kryukov; Mahoko Ueda Takahashi; So Nakagawa; Tadashi Imanishi (Bioinform., 2019)