CGRtools: Python Library for Molecule, Reaction, and Condensed Graph of Reaction Processing. - Ramil I. Nugmanov; Ravil N. Mukhametgaleev; Tagir Akhmetshin; Timur Gimadiev; Valentina A. Afonina; Timur I. Madzhidov; Alexandre Varnek (J. Chem. Inf. Model., 2019)

HyFactor: A Novel Open-Source, Graph-Based Architecture for Chemical Structure Generation. - Tagir Akhmetshin; Arkadii I. Lin; Daniyar Mazitov; Yuliana Zabolotna; Evgenii Ziaikin; Timur I. Madzhidov; Alexandre Varnek (J. Chem. Inf. Model., 2022)

Combinatorial Library Neural Network (CoLiNN) for Combinatorial Library Visualization Without Compound Enumeration. - Regina Pikalyova; Tagir Akhmetshin; Dragos Horvath; Alexandre Varnek (ICANN (10), 2024)

SynPlanner: An End-to-End Tool for Synthesis Planning. - Tagir Akhmetshin; Dmitry V. Zankov; Philippe Gantzer; Dmitry Babadeev; Anna Pinigina; Timur I. Madzhidov; Alexandre Varnek (J. Chem. Inf. Model., 2025)