Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation. - Alexander E. Kel; Tatiana Konovalova; Tagir F. Valeev; Evgeny Cheremushkin; Olga V. Kel-Margoulis; Edgar Wingender (German Conference on Bioinformatics, 2005)

Composite Module Analyst: Tool for Prediction of DNA Transcription Regulation. Testing on Simulated Data. - Tatiana Konovalova; Tagir F. Valeev; Evgeny Cheremushkin; Alexander E. Kel (ICNC (2), 2005)

Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data. - Oxana A. Volkova; Yury V. Kondrakhin; Ivan S. Yevshin; Tagir F. Valeev; Ruslan N. Sharipov (J. Bioinform. Comput. Biol., 2016)

GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments. - Ivan S. Yevshin; Ruslan N. Sharipov; Tagir F. Valeev; Alexander E. Kel; Fedor A. Kolpakov (Nucleic Acids Res., 2017)