Prefix-free parsing for building big BWTs. - Christina Boucher 001; Travis Gagie; Alan Kuhnle; Ben Langmead; Giovanni Manzini; Taher Mun (Algorithms Mol. Biol., 2019)

Efficient Construction of a Complete Index for Pan-Genomics Read Alignment. - Alan Kuhnle; Taher Mun; Christina Boucher 001; Travis Gagie; Ben Langmead; Giovanni Manzini (J. Comput. Biol., 2020)

Matching Reads to Many Genomes with the r-Index. - Taher Mun; Alan Kuhnle; Christina Boucher 001; Travis Gagie; Ben Langmead; Giovanni Manzini (J. Comput. Biol., 2020)

LevioSAM: fast lift-over of variant-aware reference alignments. - Taher Mun; Nae-Chyun Chen; Ben Langmead (Bioinform., 2021)

Minimizing Reference Bias: The Impute-First Approach for Personalized Genome Analysis. - Naga Sai Kavya Vaddadi; Taher Mun; Benjamin Thomas Langmead (BCB, 2023)

Pangenomic genotyping with the marker array. - Taher Mun; Naga Sai Kavya Vaddadi; Ben Langmead (Algorithms Mol. Biol., 2023)