Parallelization of Lee's Routing Algorithm on a Hypercube Multicomputer. - Tahsin M. Kurç; Cevdet Aykanat; Fikret Erçal (EDMCC, 1991)

Efficient Parallel Maze Routing Algorithms on a Hypercube Multicomputer. - Cevdet Aykanat; Tahsin M. Kurç (ICPP (3), 1991)

Comparison of Two Image-Space Subdivision Algorithms for Direct Volume Rendering on Distributed-Memory Multicomputers. - Egemen Tanin; Tahsin M. Kurç; Cevdet Aykanat; Bülent Özgüç (PARA, 1995)

Active Pixel Merging on Hypercube Multicomputers. - Tahsin M. Kurç; Cevdet Aykanat; Bülent Özgüç (HPCN Europe, 1996)

A Comparison of Spatial Subdivision Algorithms for Sort-First Rendering. - Tahsin M. Kurç; Hüuseyin Kutluca; Cevdet Aykanat; Bülent Özgüç (HPCN Europe, 1997)

A parallel scaled conjugate-gradient algorithm for the solution phase of gathering radiosity on hypercubes. - Tahsin M. Kurç; Cevdet Aykanat; Bülent Özgüç (Vis. Comput., 1997)

Pararllel rendering algorithms for distributed-memory multicomputers (Çok işlemcili dağıtık hafızalı bilgisayarlarda paralel görüntüleme algoritmaları) - Tahsin M. Kurç (1997)

A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines. - Mustafa Uysal; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (LCR, 1998)

Object-space parallel polygon rendering on hypercubes. - Tahsin M. Kurç; Cevdet Aykanat; Bülent Özgüç (Comput. Graph., 1998)

A High-Performance Database System for Managing Large Multi-resolution Medical Images. - Tahsin M. Kurç; Michael D. Beynon; Chialin Chang; Renato Ferreira 001; Ben Bederson; Joel H. Saltz; Alan Sussman (AMIA, 1999)

Coupling Multiple Simulations via a High Performance Customizable Database System. - Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (PP, 1999)

Querying Very Large Multi-dimensional Datasets in ADR. - Tahsin M. Kurç; Chialin Chang; Renato Ferreira 001; Alan Sussman; Joel H. Saltz (SC, 1999)

Object-Relational Queries into Multidimensional Databases with the Active Data Repository. - Renato Ferreira 001; Tahsin M. Kurç; Michael D. Beynon; Chialin Chang; Alan Sussman; Joel H. Saltz (Parallel Process. Lett., 1999)

Design of a Framework for Data-Intensive Wide-Area Applications. - Michael D. Beynon; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (Heterogeneous Computing Workshop, 2000)

Optimizing Retrieval and Processing of Multi-Dimensional Scientific Datasets. - Chialin Chang; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (IPDPS, 2000)

DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems. - Michael D. Beynon; Renato Ferreira 001; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (IEEE Symposium on Mass Storage Systems, 2000)

Efficient Performance Prediction for Large-Scale, Data-Intensive Applications. - Tahsin M. Kurç; Mustafa Uysal; Hyeonsang Eom; Jeffrey K. Hollingsworth; Joel H. Saltz; Alan Sussman (Int. J. High Perform. Comput. Appl., 2000)

Image-Space Decomposition Algorithms for Sort-First Parallel Volume Rendering of Unstructured Grids. - Hüuseyin Kutluca; Tahsin M. Kurç; Cevdet Aykanat (J. Supercomput., 2000)

Performance Optimization for Data Intensive Grid Applications. - Michael D. Beynon; Alan Sussman; Ümit V. Çatalyürek; Tahsin M. Kurç; Joel H. Saltz (Active Middleware Services, 2001)

A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation. - Chialin Chang; Tahsin M. Kurç; Alan Sussman; Ümit V. Çatalyürek; Joel H. Saltz (PP, 2001)

Efficient execution of multiple query workloads in data analysis applications. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (SC, 2001)

Visualization of Large Data Sets with the Active Data Repository. - Tahsin M. Kurç; Ümit V. Çatalyürek; Chialin Chang; Alan Sussman; Joel H. Saltz (IEEE Computer Graphics and Applications, 2001)

Distributed processing of very large datasets with DataCutter. - Michael D. Beynon; Tahsin M. Kurç; Ümit V. Çatalyürek; Chialin Chang; Alan Sussman; Joel H. Saltz (Parallel Comput., 2001)

Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (CCGRID, 2002)

Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (IPDPS, 2002)

Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems. - Michael D. Beynon; Tahsin M. Kurç; Ümit V. Çatalyürek; Alan Sussman; Joel H. Saltz (IPDPS, 2002)

Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments. - Ümit V. Çatalyürek; Eric Stahlberg; Renato Ferreira 001; Tahsin M. Kurç; Joel H. Saltz (IPDPS, 2002)

Active Proxy-G: optimizing the query execution process in the grid. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (SC, 2002)

Executing multiple pipelined data analysis operations in the grid. - Matthew Spencer; Renato Ferreira 001; Michael D. Beynon; Tahsin M. Kurç; Ümit V. Çatalyürek; Alan Sussman; Joel H. Saltz (SC, 2002)

Optimizing execution of component-based applications using group instances. - Michael D. Beynon; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (Future Gener. Comput. Syst., 2002)

Processing large-scale multi-dimensional data in parallel and distributed environments. - Michael D. Beynon; Chialin Chang; Ümit V. Çatalyürek; Tahsin M. Kurç; Alan Sussman; Henrique Andrade; Renato Ferreira 001; Joel H. Saltz (Parallel Comput., 2002)

Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. - Shannon Hastings; Tahsin M. Kurç; Stephen Langella; Ümit V. Çatalyürek; Tony Pan; Joel H. Saltz (CCGRID, 2003)

A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data Source. - Radhakrishnan Sundaresan; Tahsin M. Kurç; Mario Lauria; Srinivasan Parthasarathy 001; Joel H. Saltz (CCGRID, 2003)

Applying Database Support for Large Scale Data Driven Science in Distributed Environments. - Sivaramakrishnan Narayanan; Ümit V. Çatalyürek; Tahsin M. Kurç; Xi Zhang; Joel H. Saltz (GRID, 2003)

Impact of High Performance Sockets on Data Intensive Applications. - Pavan Balaji; Jiesheng Wu; Tahsin M. Kurç; Ümit V. Çatalyürek; Dhabaleswar K. Panda 001; Joel H. Saltz (HPDC, 2003)

Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model. - Radhakrishnan Sundaresan; Mario Lauria; Tahsin M. Kurç; Srinivasan Parthasarathy 001; Joel H. Saltz (HPDC, 2003)

Driving Scientific Applications by Data in Distributed Environments. - Joel H. Saltz; Ümit V. Çatalyürek; Tahsin M. Kurç; Mike Gray; Shannon Hastings; Stephen Langella; Sivaramakrishnan Narayanan; Ryan Martino; Steven Bryant; Malgorzata Peszynska; Mary F. Wheeler; Alan Sussman; et al. (International Conference on Computational Science, 2003)

Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (IPDPS, 2003)

Efficient Execution of Multi-query Data Analysis Batches Using Compiler Optimization Strategies. - Henrique Andrade; Suresh Aryangat; Tahsin M. Kurç; Joel H. Saltz; Alan Sussman (LCPC, 2003)

A Component-based Implementation of Multiple Sequence Alignment. - Ümit V. Çatalyürek; Mike Gray; Tahsin M. Kurç; Joel H. Saltz; Eric Stahlberg; Renato Ferreira 001 (SAC, 2003)

Optimizing Reduction Computations In a Distributed Environment. - Tahsin M. Kurç; Feng Lee; Gagan Agrawal; Ümit V. Çatalyürek; Renato Ferreira 001; Joel H. Saltz (SC, 2003)

Database Support for Data-Driven Scientific Applications in the Grid. - Sivaramakrishnan Narayanan; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz (Parallel Process. Lett., 2003)

The virtual microscope. - Ümit V. Çatalyürek; Michael D. Beynon; Chialin Chang; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (IEEE Trans. Inf. Technol. Biomed., 2003)

Serving queries to multi-resolution datasets on disk-based storage clusters. - Xi Zhang; Tony Pan; Ümit V. Çatalyürek; Tahsin M. Kurç; Joel H. Saltz (CCGRID, 2004)

A distributed data management middleware for data-driven application systems. - Stephen Langella; Shannon Hastings; Scott Oster; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz (CLUSTER, 2004)

Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O. - Nagavijayalakshmi Vydyanathan; Gaurav Khanna 002; Tahsin M. Kurç; Ümit V. Çatalyürek; Pete Wyckoff; Joel H. Saltz; P. Sadayappan (GRID, 2004)

Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. - Matheus Ribeiro; Tahsin M. Kurç; Tony Pan; Kun Huang 001; Ümit V. Çatalyürek; Xi Zhang; Stephen Langella; Shannon Hastings; Scott Oster; Renato Ferreira 001; Joel H. Saltz (High Performance Computing Workshop, 2004)

An Approach for Automatic Data Virtualization. - Li Weng; Gagan Agrawal; Ümit V. Çatalyürek; Tahsin M. Kurç; Sivaramakrishnan Narayanan; Joel H. Saltz (HPDC, 2004)

Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. - Xi Zhang; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Sivaramakrishnan Narayanan; Pete Wyckoff; Joel H. Saltz (HPDC, 2004)

Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies. - Manish Parashar; Hector Klie; Ümit V. Çatalyürek; Tahsin M. Kurç; Vincent Matossian; Joel H. Saltz; Mary F. Wheeler (International Conference on Computational Science, 2004)

A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets. - Brent Woods; Bradley D. Clymer; Joel H. Saltz; Tahsin M. Kurç (SC, 2004)

Optimizing the Execution of Multiple Data Analysis Queries on Parallel and Distributed Environments. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (IEEE Trans. Parallel Distributed Syst., 2004)

A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O. - Gaurav Khanna 002; Nagavijayalakshmi Vydyanathan; Tahsin M. Kurç; Ümit V. Çatalyürek; Pete Wyckoff; Joel H. Saltz; P. Sadayappan (CCGRID, 2005)

Servicing range queries on multidimensional datasets with partial replicas. - Li Weng; Ümit V. Çatalyürek; Tahsin M. Kurç; Gagan Agrawal; Joel H. Saltz (CCGRID, 2005)

Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. - Benjamin Rutt; Vijay S. Kumar; Tony Pan; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz; Yujun Wang (CLUSTER, 2005)

Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services. - Sivaramakrishnan Narayanan; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz (DMG, 2005)

Towards Dynamic Data-Driven Optimization of Oil Well Placement. - Manish Parashar; Vincent Matossian; Wolfgang Bangerth; Hector Klie; Benjamin Rutt; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz; Mary F. Wheeler (International Conference on Computational Science (2), 2005)

Design of a next generation sampling service for large scale data analysis applications. - Huai Wang; Srinivasan Parthasarathy 001; Amol Ghoting; Shirish Tatikonda; Gregory Buehrer; Tahsin M. Kurç; Joel H. Saltz (ICS, 2005)

A Services Oriented Framework for Next Generation Data Analysis Centers. - Huai Wang; Amol Ghoting; Gregory Buehrer; Shirish Tatikonda; Srinivasan Parthasarathy 001; Tahsin M. Kurç; Joel H. Saltz (IPDPS, 2005)

Supporting Large Scale Medical and Scientific Datasets. - Ümit V. Çatalyürek; Shannon Hastings; Kun Huang 001; Vijay S. Kumar; Tahsin M. Kurç; Stephen Langella; Sivaramakrishnan Narayanan; Scott Oster; Tony Pan; Benjamin Rutt; Xi Zhang; Joel H. Saltz (PARCO, 2005)

Grid-based management of biomedical data using an XML-based distributed data management system. - Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Daniel Janies; Joel H. Saltz (SAC, 2005)

A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies. - Tahsin M. Kurç; Ümit V. Çatalyürek; Xi Zhang; Joel H. Saltz; Ryan Martino; Mary F. Wheeler; Malgorzata Peszynska; Alan Sussman; Christian Hansen 002; Mrinal K. Sen; Roustam Seifoullaev; Paul L. Stoffa; et al. (Concurr. Pract. Exp., 2005)

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies. - Manish Parashar; Hector Klie; Ümit V. Çatalyürek; Tahsin M. Kurç; Wolfgang Bangerth; Vincent Matossian; Joel H. Saltz; Mary F. Wheeler (Future Gener. Comput. Syst., 2005)

Application of Information Technology: A Grid-Based Image Archival and Analysis System. - Shannon Hastings; Scott Oster; Stephen Langella; Tahsin M. Kurç; Tony Pan; Ümit V. Çatalyürek; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2005)

XML database support for distributed execution of data-intensive scientific workflows. - Shannon Hastings; Matheus Ribeiro; Stephen Langella; Scott Oster; Ümit V. Çatalyürek; Tony Pan; Kun Huang 001; Renato Ferreira 001; Joel H. Saltz; Tahsin M. Kurç (SIGMOD Rec., 2005)

Dorian: Grid Service Infrastructure for Identity Management and Federation. - Stephen Langella; Scott Oster; Shannon Hastings; Frank Siebenlist; Tahsin M. Kurç; Joel H. Saltz (CBMS, 2006)

TRIPS and TIDES: new algorithms for tree mining. - Shirish Tatikonda; Srinivasan Parthasarathy 001; Tahsin M. Kurç (CIKM, 2006)

Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications. - Nagavijayalakshmi Vydyanathan; Sriram Krishnamoorthy; Gerald Sabin; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (CLUSTER, 2006)

Service-Based Access to and Processing of Large Scientific Datasets. - Ümit V. Çatalyürek; Sivaramakrishnan Narayanan; Olcay Sertel; Jun Kong 002; Berkant Barla Cambazoglu; Tony Pan; Ashish Sharma 001; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Metin Nafi Gürcan; et al. (High Performance Computing Workshop, 2006)

Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O. - Gaurav Khanna 002; Nagavijayalakshmi Vydyanathan; Ümit V. Çatalyürek; Tahsin M. Kurç; Sriram Krishnamoorthy; P. Sadayappan; Joel H. Saltz (HPDC, 2006)

Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository. - Manish Parashar; Vincent Matossian; Hector Klie; Sunil G. Thomas; Mary F. Wheeler; Tahsin M. Kurç; Joel H. Saltz; Roelof Versteeg (International Conference on Computational Science (3), 2006)

On Creating Efficient Object-relational Views of Scientific Datasets. - Sivaramakrishnan Narayanan; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz (ICPP, 2006)

An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications. - Nagavijayalakshmi Vydyanathan; Sriram Krishnamoorthy; Gerald Sabin; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (ICPP, 2006)

Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries. - Li Weng; Ümit V. Çatalyürek; Tahsin M. Kurç; Gagan Agrawal; Joel H. Saltz (ICPP, 2006)

I/O conscious algorithm design and systems support for data analysis on emerging architectures. - Gregory Buehrer; Amol Ghoting; Xi Zhang; Shirish Tatikonda; Srinivasan Parthasarathy 001; Tahsin M. Kurç; Joel H. Saltz (IPDPS, 2006)

Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications. - Xi Zhang; Tahsin M. Kurç; Joel H. Saltz; Srinivasan Parthasarathy 001 (IPDPS, 2006)

A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing. - Gaurav Khanna 002; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (JSSPP, 2006)

Imaging and visual analysis - Large image correction and warping in a cluster environment. - Vijay S. Kumar; Benjamin Rutt; Tahsin M. Kurç; Ümit V. Çatalyürek; Joel H. Saltz; Sunny K. Chow; Stephan Lamont; Maryann E. Martone (SC, 2006)

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. - Joel H. Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Tahsin M. Kurç; William Sanchez; Manav Kher; Arumani Manisundaram; Krishnakant Shanbhag; Peter A. Covitz (Bioinform., 2006)

Models, methods and middleware for grid-enabled multiphysics oil reservoir management. - Hector Klie; Wolfgang Bangerth; X. Gai; Mary F. Wheeler; Paul L. Stoffa; Mrinal K. Sen; Manish Parashar; Ümit V. Çatalyürek; Joel H. Saltz; Tahsin M. Kurç (Eng. Comput., 2006)

Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis. - Xi Zhang; Benjamin Rutt; Ümit V. Çatalyürek; Tahsin M. Kurç; Paul L. Stoffa; Mrinal K. Sen; Joel H. Saltz (Int. J. High Perform. Comput. Appl., 2006)

Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases. - Tahsin M. Kurç; Daniel Janies; Andrew D. Johnson; Stephen Langella; Scott Oster; Shannon Hastings; Farhat Habib; Terry Camerlengo; David Ervin; Ümit V. Çatalyürek; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2006)

The Cancer Biomedical Informatics Grid (caBIG™) Security Infrastructure. - Stephen Langella; Scott Oster; Shannon Hastings; Frank Siebenlist; Joshua Phillips; David Ervin; Justin Permar; Tahsin M. Kurç; Joel H. Saltz (AMIA, 2007)

caGrid 1.0: A Grid Enterprise Architecture for Cancer Research. - Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi K. Madduri; Tahsin M. Kurç; Frank Siebenlist; Peter A. Covitz; Krishnakant Shanbhag; Ian T. Foster; Joel H. Saltz (AMIA, 2007)

An Efficient and Reliable Scientific Workflow System. - Tulio Tavares; George Teodoro; Tahsin M. Kurç; Renato Ferreira 001; Dorgival Olavo Guedes Neto; Wagner Meira Jr.; Ümit V. Çatalyürek; Shannon Hastings; Scott Oster; Stephen Langella; Joel H. Saltz (CCGRID, 2007)

Performance vs. accuracy trade-offs for large-scale image analysis applications. - Vijay S. Kumar; Tahsin M. Kurç; Jun Kong 002; Ümit V. Çatalyürek; Metin N. Gurcan; Joel H. Saltz (CLUSTER, 2007)

Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters. - Gaurav Khanna 002; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (Euro-Par, 2007)

Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters. - Nagavijayalakshmi Vydyanathan; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (Euro-Par, 2007)

Optimizing multiple queries on scientific datasets with partial replicas. - Li Weng; Ümit V. Çatalyürek; Tahsin M. Kurç; Gagan Agrawal; Joel H. Saltz (GRID, 2007)

Dynamic Data-Driven Systems Approach for Simulation Based Optimizations. - Tahsin M. Kurç; Xi Zhang; Manish Parashar; Hector Klie; Mary F. Wheeler; Ümit V. Çatalyürek; Joel H. Saltz (International Conference on Computational Science (1), 2007)

Intelligent Optimization of Parallel and Distributed Applications. - Bhupesh Bansal; Ümit V. Çatalyürek; Jacqueline Chame; Chun Chen 002; Ewa Deelman; Yolanda Gil; Mary W. Hall; Vijay S. Kumar; Tahsin M. Kurç; Kristina Lerman; Aiichiro Nakano; Yoon-Ju Lee Nelson; et al. (IPDPS, 2007)

Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms. - Amol Ghoting; Gregory Buehrer; Matthew Goyder; Shirish Tatikonda; Xi Zhang; Srinivasan Parthasarathy 001; Tahsin M. Kurç; Joel H. Saltz (IPDPS, 2007)

Toward terabyte pattern mining: an architecture-conscious solution. - Gregory Buehrer; Srinivasan Parthasarathy 001; Shirish Tatikonda; Tahsin M. Kurç; Joel H. Saltz (PPoPP, 2007)

Parallel four-dimensional Haralick texture analysis for disk-resident image datasets. - Brent Woods; Bradley D. Clymer; Johannes T. Heverhagen; Michael V. Knopp; Joel H. Saltz; Tahsin M. Kurç (Concurr. Comput. Pract. Exp., 2007)

Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services. - Shannon Hastings; Scott Oster; Stephen Langella; David Ervin; Tahsin M. Kurç; Joel H. Saltz (J. Grid Comput., 2007)

GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. - Metin N. Gurcan; Tony Pan; Ashish Sharma 001; Tahsin M. Kurç; Scott Oster; Stephen Langella; Shannon Hastings; Khan M. Siddiqui; Eliot L. Siegel; Joel H. Saltz (J. Digit. Imaging, 2007)

Adaptive decomposition and remapping algorithms for object-space-parallel direct volume rendering of unstructured grids. - Cevdet Aykanat; Berkant Barla Cambazoglu; Ferit Findik; Tahsin M. Kurç (J. Parallel Distributed Comput., 2007)

Active semantic caching to optimize multidimensional data analysis in parallel and distributed environments. - Henrique Andrade; Tahsin M. Kurç; Alan Sussman; Joel H. Saltz (Parallel Comput., 2007)

A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. - Joel H. Saltz; Shannon Hastings; Stephen Langella; Scott Oster; Tahsin M. Kurç; Philip R. O. Payne; Renato Ferreira 001; Beth Plale; Carole A. Goble; David Ervin; Ashish Sharma 001; Tony Pan; et al. (HealthGrid, 2008)

Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP. - Gaurav Khanna 002; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz; Rajkumar Kettimuthu; Ian T. Foster (HPDC, 2008)

A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows. - Nagavijayalakshmi Vydyanathan; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (ICPP, 2008)

A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP. - Gaurav Khanna 002; Ümit V. Çatalyürek; Tahsin M. Kurç; Rajkumar Kettimuthu; P. Sadayappan; Joel H. Saltz (IPDPS, 2008)

Designing and parameterizing a workflow for optimization: A case study in biomedical imaging. - Vijay S. Kumar; Mary W. Hall; Jihie Kim; Yolanda Gil; Tahsin M. Kurç; Ewa Deelman; Varun Ratnakar; Joel H. Saltz (IPDPS, 2008)

Translational research design templates, Grid computing, and HPC. - Joel H. Saltz; Scott Oster; Shannon Hastings; Stephen Langella; Renato Ferreira 001; Justin Permar; Ashish Sharma 001; David Ervin; Tony Pan; Ümit V. Çatalyürek; Tahsin M. Kurç (IPDPS, 2008)

Using overlays for efficient data transfer over shared wide-area networks. - Gaurav Khanna 002; Ümit V. Çatalyürek; Tahsin M. Kurç; Rajkumar Kettimuthu; P. Sadayappan; Ian T. Foster; Joel H. Saltz (SC, 2008)

Analysis and Semantic Querying in Large Biomedical Image Datasets. - Vijay S. Kumar; Sivaramakrishnan Narayanan; Tahsin M. Kurç; Jun Kong 002; Metin N. Gurcan; Joel H. Saltz (Computer, 2008)

e-Science, caGrid, and Translational Biomedical Research. - Joel H. Saltz; Tahsin M. Kurç; Shannon Hastings; Stephen Langella; Scott Oster; David Ervin; Ashish Sharma 001; Tony Pan; Metin N. Gurcan; Justin Permar; Renato Ferreira 001; Philip R. O. Payne; et al. (Computer, 2008)

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. - George Teodoro; Tulio Tavares; Renato Ferreira 001; Tahsin M. Kurç; Wagner Meira Jr.; Dorgival Olavo Guedes Neto; Tony Pan; Joel H. Saltz (Int. J. Parallel Program., 2008)

Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. - Stephen Langella; Shannon Hastings; Scott Oster; Tony Pan; Ashish Sharma 001; Justin Permar; David Ervin; Berkant Barla Cambazoglu; Tahsin M. Kurç; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2008)

Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. - Scott Oster; Stephen Langella; Shannon Hastings; David Ervin; Ravi K. Madduri; Joshua Phillips; Tahsin M. Kurç; Frank Siebenlist; Peter A. Covitz; Krishnakant Shanbhag; Ian T. Foster; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2008)

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. - Kishore Mosaliganti; Tony Pan; Randall Ridgway; Richard Sharp; Lee Cooper 001; Alex Gulacy; Ashish Sharma 001; M. Okan Irfanoglu; Raghu Machiraju; Tahsin M. Kurç; Alain de Bruin; Pamela Wenzel; et al. (J. Biomed. Informatics, 2008)

Large-Scale Biomedical Image Analysis in Grid Environments. - Vijay S. Kumar; Benjamin Rutt; Tahsin M. Kurç; Ümit V. Çatalyürek; Tony C. Pan; Sunny K. Chow; Stephan Lamont; Maryann E. Martone; Joel H. Saltz (IEEE Trans. Inf. Technol. Biomed., 2008)

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. - Terry Camerlengo; Hatice Gulcin Ozer; Pearlly Yan; Jeffrey D. Parvin; Tim Hui-Ming Huang; Kun Huang 001; Mingxiang Teng; Lang Li 001; Yunlong Liu; Francisco Perez; Tahsin M. Kurç (BIBM, 2009)

An integrated framework for performance-based optimization of scientific workflows. - Vijay S. Kumar; P. Sadayappan; Gaurang Mehta; Karan Vahi; Ewa Deelman; Varun Ratnakar; Jihie Kim; Yolanda Gil; Mary W. Hall; Tahsin M. Kurç; Joel H. Saltz (HPDC, 2009)

Architectural implications for spatial object association algorithms. - Vijay S. Kumar; Tahsin M. Kurç; Joel H. Saltz; Ghaleb Abdulla; Scott R. Kohn; Celeste Matarazzo (IPDPS, 2009)

A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. - David J. Foran; Lin Yang 002; Oncel Tuzel; Wenjin Chen; Jun Hu; Tahsin M. Kurç; Renato Ferreira 001; Joel H. Saltz (ISBI, 2009)

Parallel materialization of large ABoxes. - Sivaramakrishnan Narayanan; Ümit V. Çatalyürek; Tahsin M. Kurç; Joel H. Saltz (SAC, 2009)

HPC and Grid Computing for Integrative Biomedical Research. - Tahsin M. Kurç; Shannon Hastings; Vijay S. Kumar; Stephen Langella; Ashish Sharma 001; Tony Pan; Scott Oster; David Ervin; Justin Permar; Sivaramakrishnan Narayanan; Yolanda Gil; Ewa Deelman; et al. (Int. J. High Perform. Comput. Appl., 2009)

VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. - Ashish Sharma 001; Tony Pan; Berkant Barla Cambazoglu; Metin N. Gurcan; Tahsin M. Kurç; Joel H. Saltz (J. Digit. Imaging, 2009)

An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications. - Nagavijayalakshmi Vydyanathan; Sriram Krishnamoorthy; Gerald M. Sabin; Ümit V. Çatalyürek; Tahsin M. Kurç; P. Sadayappan; Joel H. Saltz (IEEE Trans. Parallel Distributed Syst., 2009)

High-Performance Systems for in Silico Microscopy Imaging Studies. - Fusheng Wang 001; Tahsin M. Kurç; Patrick M. Widener; Tony Pan; Jun Kong 002; Lee Cooper 001; David A. Gutman; Ashish Sharma 001; Sharath R. Cholleti; Vijay Kumar (DILS, 2010)

Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. - Jun Kong 002; Lee Cooper 001; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; Joel H. Saltz (ICASSP, 2010)

High Performance Computing Techniques for Scaling Image Analysis Workflows. - Patrick M. Widener; Tahsin M. Kurç; Wenjin Chen; Fusheng Wang 001; Lin Yang 002; Jun Hu; Vijay Kumar; Vicky Chu; Lee Cooper 001; Jun Kong 002; Ashish Sharma 001; Tony Pan; et al. (PARA (2), 2010)

Parameterized specification, configuration and execution of data-intensive scientific workflows. - Vijay S. Kumar; Tahsin M. Kurç; Varun Ratnakar; Jihie Kim; Gaurang Mehta; Karan Vahi; Yoon-Ju Lee Nelson; P. Sadayappan; Ewa Deelman; Yolanda Gil; Mary W. Hall; Joel H. Saltz (Clust. Comput., 2010)

An Integrative Approach for In Silico Glioma Research. - Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Fusheng Wang 001; Sharath R. Cholleti; Tony C. Pan; Patrick M. Widener; Ashish Sharma 001; Tom Mikkelsen; Adam E. Flanders; Daniel L. Rubin; Erwin G. Van Meir; et al. (IEEE Trans. Biomed. Eng., 2010)

Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies. - Apurva Mohan; Douglas M. Blough; Tahsin M. Kurç; Andrew R. Post; Joel H. Saltz (BIBM, 2011)

Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. - Jun Kong 002; Lee Cooper 001; Tahsin M. Kurç; Daniel J. Brat; Joel H. Saltz (EMBC, 2011)

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. - Jun Kong 002; Lee Cooper 001; Carlos Sanchez Moreno; Fusheng Wang 001; Tahsin M. Kurç; Joel H. Saltz; Daniel J. Brat (EMBC, 2011)

Morphological signatures and genomic correlates in glioblastoma. - Lee A. D. Cooper; Jun Kong 002; Fusheng Wang 001; Tahsin M. Kurç; Carlos Sanchez Moreno; Daniel J. Brat; Joel H. Saltz (ISBI, 2011)

A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. - Jun Kong 002; Lee Cooper 001; Fusheng Wang 001; Candace Chisolm; Carlos Sanchez Moreno; Tahsin M. Kurç; Patrick M. Widener; Daniel J. Brat; Joel H. Saltz (ISBI, 2011)

A new steerable pressure force for parametric deformable models. - Jun Kong 002; Lee Cooper 001; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; Joel H. Saltz (Image Processing, 2011)

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. - David J. Foran; Lin Yang 002; Wenjin Chen; Jun Hu; Lauri A. Goodell; Michael Reiss; Fusheng Wang 001; Tahsin M. Kurç; Tony Pan; Ashish Sharma 001; Joel H. Saltz (J. Am. Medical Informatics Assoc., 2011)

Optimizing latency and throughput of application workflows on clusters. - Naga Vydyanathan; Ümit V. Çatalyürek; Tahsin M. Kurç; Ponnuswamy Sadayappan; Joel H. Saltz (Parallel Comput., 2011)

Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. - Jun Kong 002; Lee A. D. Cooper; Fusheng Wang 001; David A. Gutman; Jingjing Gao; Candace Chisolm; Ashish Sharma 001; Tony Pan; Erwin G. Van Meir; Tahsin M. Kurç; Carlos Sanchez Moreno; Joel H. Saltz; et al. (IEEE Trans. Biomed. Eng., 2011)

Systematic Modeling, Testing, and Monitoring of Information Integrity in Federated Ontology-driven Data Sources. - Mijung Kim; Jake Cobb; Tahsin M. Kurç; Alessandro Orso; Mary Jean Harrold; Andrew R. Post; Shamkant B. Navathe; Joel H. Saltz (AMIA, 2012)

High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. - Tahsin M. Kurç; Joel H. Saltz; George Teodoro; Tony Pan; Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Daniel J. Brat; Fusheng Wang 001 (AMIA, 2012)

Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. - George Teodoro; Tahsin M. Kurç; Tony Pan; Lee A. D. Cooper; Jun Kong 002; Patrick M. Widener; Joel H. Saltz (IPDPS, 2012)

Efficient regression testing of ontology-driven systems. - Mijung Kim; Jake Cobb; Mary Jean Harrold; Tahsin M. Kurç; Alessandro Orso; Joel H. Saltz; Andrew R. Post; Kunal Malhotra; Shamkant B. Navathe (ISSTA, 2012)

High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Joel H. Saltz (CoRR, 2012)

Integrated morphologic analysis for the identification and characterization of disease subtypes. - Lee A. D. Cooper; Jun Kong 002; David A. Gutman; Fusheng Wang 001; Jingjing Gao; Christina Appin; Sharath R. Cholleti; Tony Pan; Ashish Sharma 001; Lisa Scarpace; Tom Mikkelsen; Tahsin M. Kurç; et al. (J. Am. Medical Informatics Assoc., 2012)

Digital Pathology: Data-Intensive Frontier in Medical Imaging. - Lee A. D. Cooper; Alexis B. Carter; Alton B. Farris; Fusheng Wang 001; Jun Kong 002; David A. Gutman; Patrick M. Widener; Tony C. Pan; Sharath R. Cholleti; Ashish Sharma 001; Tahsin M. Kurç; Daniel J. Brat; et al. (Proc. IEEE, 2012)

Temporal Abstraction-based Clinical Phenotyping with Eureka! - Andrew R. Post; Tahsin M. Kurç; Richie Willard; Himanshu Rathod; Michel Mansour; Akshatha Kalsanka Pai; William M. Torian; Sanjay Agravat; Suzanne Sturm; Joel H. Saltz (AMIA, 2013)

Clinical Phenotyping with the Analytic Information Warehouse. - Andrew R. Post; Tahsin M. Kurç; Richie Willard; Himanshu Rathod; Michel Mansour; Akshatha Kalsanka Pai; William M. Torian; Sanjay Agravat; Suzanne Sturm; Joel H. Saltz (AMIA, 2013)

High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. - Jun Kong 002; Fusheng Wang 001; George Teodoro; Lee Cooper 001; Carlos Sanchez Moreno; Tahsin M. Kurç; Tony Pan; Joel H. Saltz; Daniel J. Brat (BIBM, 2013)

High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Norbert Podhorszki; Scott Klasky; Joel H. Saltz (IPDPS, 2013)

Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU. - George Teodoro; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Joel H. Saltz (CoRR, 2013)

Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. - Joel H. Saltz; George Teodoro; Tony Pan; Lee A. D. Cooper; Jun Kong 002; Scott Klasky; Tahsin M. Kurç (Int. J. High Perform. Comput. Appl., 2013)

Semantically Interoperable XML Data. - Cristobal Vergara-Niedermayr; Fusheng Wang 001; Tony Pan; Tahsin M. Kurç; Joel H. Saltz (Int. J. Semantic Comput., 2013)

Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data. - David A. Gutman; Jake Cobb; Dhananjaya Somanna; Yuna Park; Fusheng Wang 001; Tahsin M. Kurç; Joel H. Saltz; Daniel J. Brat; Lee A. D. Cooper (J. Am. Medical Informatics Assoc., 2013)

The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data. - Andrew R. Post; Tahsin M. Kurç; Sharath R. Cholleti; Jingjing Gao; Xia Lin; William Bornstein; Dedra Cantrell; David Levine; Sam Hohmann; Joel H. Saltz (J. Biomed. Informatics, 2013)

Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee A. D. Cooper; Joel H. Saltz (Parallel Comput., 2013)

Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis. - George Teodoro; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Joel H. Saltz (IPDPS, 2014)

Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems. - Guilherme Andrade; Renato Ferreira 001; George Teodoro; Leonardo Rocha 001; Joel H. Saltz; Tahsin M. Kurç (SBAC-PAD, 2014)

Parallel content-based sub-image retrieval using hierarchical searching. - Lin Yang 002; Xin Qi 007; Fuyong Xing; Tahsin M. Kurç; Joel H. Saltz; David J. Foran (Bioinform., 2014)

Region Templates: Data Representation and Management for Large-Scale Image Analysis. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Scott Klasky; Joel H. Saltz (CoRR, 2014)

Region templates: Data representation and management for high-throughput image analysis. - George Teodoro; Tony Pan; Tahsin M. Kurç; Jun Kong 002; Lee Cooper 001; Scott Klasky; Joel H. Saltz (Parallel Comput., 2014)

OpenHealth Platform for Interactive Contextualization of Population Health Open Data. - Jonas S. Almeida; Janos G. Hajagos; Ivan Crnosija; Tahsin M. Kurç; Mary M. Saltz; Joel H. Saltz (AMIA, 2015)

Integrative Informatics and Predictive Modeling Support for Population Health. - Mary M. Saltz; Joel H. Saltz; Janos G. Hajagos; Andrew White; Charles Boicey; Jim Murry; Ivan Crnosija; Tahsin M. Kurç; Erich Bremer; Jonas S. Almeida (AMIA, 2015)

Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). - Jeremias M. Gomes; George Teodoro; Alba de Melo; Jun Kong 002; Tahsin M. Kurç; Joel H. Saltz (SBAC-PAD, 2015)

SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. - Furqan Baig; Mudit Mehrotra; Hoang Vo; Fusheng Wang 001; Joel H. Saltz; Tahsin M. Kurç (Big-O(Q)/DMAH@VLDB, 2015)

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. - Tahsin M. Kurç; Xin Qi 007; Daihou Wang; Fusheng Wang 001; George Teodoro; Lee Cooper 001; Michael Nalisnik; Lin Yang 002; Joel H. Saltz; David J. Foran (BMC Bioinform., 2015)

Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; James E. Davis; Joel H. Saltz (CoRR, 2015)

Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs. - George Teodoro; Tahsin M. Kurç; Guilherme Andrade; Jun Kong 002; Renato Ferreira 001; Joel H. Saltz (CoRR, 2015)

Safe "cloudification" of large images through picker APIs. - Erich Bremer; Tahsin M. Kurç; Yi Gao 002; Joel H. Saltz; Jonas S. Almeida (AMIA, 2016)

POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports. - Veronica E. Lynn; Niranjan Balasubramanian; Tahsin M. Kurç; Joel H. Saltz; Rebecca Jacobson (AMIA, 2016)

Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; James E. Davis; Joel H. Saltz (CVPR, 2016)

Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows. - David Pugmire; James Kress; Jong Youl Choi; Scott Klasky; Tahsin M. Kurç; Michael Churchill; Matthew Wolf; Greg Eisenhauer; Hank Childs; Kesheng Wu; Alexander Sim; Junmin Gu; et al. (IPDPS Workshops, 2016)

Multi-scale learning based segmentation of glands in digital colonrectal pathology images. - Yi Gao 002; William Liu; Shipra Arjun; Liangjia Zhu; Vadim Ratner; Tahsin M. Kurç; Joel H. Saltz; Allen R. Tannenbaum (Digital Pathology, 2016)

Hierarchical nucleus segmentation in digital pathology images. - Yi Gao 002; Vadim Ratner; Liangjia Zhu; Tammy Diprima; Tahsin M. Kurç; Allen R. Tannenbaum; Joel H. Saltz (Digital Pathology, 2016)

Neural Networks with Smooth Adaptive Activation Functions for Regression. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; Joel H. Saltz (CoRR, 2016)

Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. - George Teodoro; Tahsin M. Kurç; Luis F. R. Taveira; Alba C. M. A. Melo; Jun Kong 002; Joel H. Saltz (CoRR, 2016)

ConvNets with Smooth Adaptive Activation Functions for Regression. - Le Hou; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; Joel H. Saltz (AISTATS, 2017)

20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon. - Joel H. Saltz; Ashish Sharma 001; Alexis B. Carter; Liron Pantanowitz; Tahsin M. Kurç (AMIA, 2017)

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. - Willian Barreiros; George Teodoro; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz (CLUSTER, 2017)

TGE: Machine Learning Based Task Graph Embedding for Large-Scale Topology Mapping. - Jong Youl Choi; Jeremy Logan; Matthew Wolf; George Ostrouchov; Tahsin M. Kurç; Qing Liu 002; Norbert Podhorszki; Scott Klasky; Melissa Romanus; Qian Sun; Manish Parashar; Randy Michael Churchill; et al. (CLUSTER, 2017)

Computing Just What You Need: Online Data Analysis and Reduction at Extreme Scales. - Ian T. Foster; Mark Ainsworth; Bryce Allen; Julie Bessac; Franck Cappello; Jong Youl Choi; Emil M. Constantinescu; Philip E. Davis; Sheng Di; Zichao Wendy Di; Hanqi Guo 001; Scott Klasky; et al. (Euro-Par, 2017)

SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing. - Furqan Baig; Hoang Vo; Tahsin M. Kurç; Joel H. Saltz; Fusheng Wang 001 (SIGSPATIAL/GIS, 2017)

StoreRush: An Application-Level Approach to Harvesting Idle Storage in a Best Effort Environment. - Qing Liu 002; Norbert Podhorszki; Jong Youl Choi; Jeremy Logan; Matthew Wolf; Scott Klasky; Tahsin M. Kurç; Xubin He (ICCS, 2017)

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. - Naiyun Zhou; Xiaxia Yu; Tianhao Zhao; Si Wen; Fusheng Wang 001; Wei Zhu 008; Tahsin M. Kurç; Allen R. Tannenbaum; Joel H. Saltz; Yi Gao 002 (Digital Pathology, 2017)

Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. - Veda Murthy; Le Hou; Dimitris Samaras; Tahsin M. Kurç; Joel H. Saltz (WACV, 2017)

Algorithm sensitivity analysis and parameter tuning for tissue image segmentation pipelines. - George Teodoro; Tahsin M. Kurç; Luis F. R. Taveira; Alba C. M. A. Melo; Yi Gao 002 (Bioinform., 2017)

Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. - Le Hou; Vu Nguyen 004; Dimitris Samaras; Tahsin M. Kurç; Yi Gao 002; Tianhao Zhao; Joel H. Saltz (CoRR, 2017)

Unsupervised Histopathology Image Synthesis. - Le Hou; Ayush Agarwal; Dimitris Samaras; Tahsin M. Kurç; Rajarsi R. Gupta; Joel H. Saltz (CoRR, 2017)

Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis. - George Teodoro; Tahsin M. Kurç; Guilherme Andrade; Jun Kong 002; Renato Ferreira 001; Joel H. Saltz (Int. J. High Perform. Comput. Appl., 2017)

Systems Demonstration: Towards a Services Oriented Platform for Combined Radiology-Pathology Image Analysis and Interpretation. - Tahsin M. Kurç; Joel H. Saltz; Fred W. Prior; Ashish Sharma 001 (AMIA, 2018)

A View from ORNL: Scientific Data Research Opportunities in the Big Data Age. - Scott Klasky; Matthew Wolf; Mark Ainsworth; Chuck Atkins; Jong Choi 001; Greg Eisenhauer; Berk Geveci; William F. Godoy; Mark Kim; James Kress; Tahsin M. Kurç; Qing Liu 002; et al. (ICDCS, 2018)

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. - Jeremias M. Gomes; Alba Cristina Magalhaes Alves de Melo; Jun Kong 002; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (Concurr. Comput. Pract. Exp., 2018)

Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. - Luis F. R. Taveira; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Erich Bremer; Joel H. Saltz; George Teodoro (CoRR, 2018)

Methods for Segmentation and Classification of Digital Microscopy Tissue Images. - Quoc Dang Vu; Simon Graham; Minh Nguyen Nhat To; Muhammad Shaban; Talha Qaiser; Navid Alemi Koohbanani; Syed Ali Khurram; Tahsin M. Kurç; Keyvan Farahani; Tianhao Zhao; Rajarsi R. Gupta; Jin Tae Kwak; et al. (CoRR, 2018)

Increasing Accuracy of Medical CNN Applying Optimization Algorithms: An Image Classification Case. - Rafael Marconi Ramos; Célia Ghedini Ralha; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (BRACIS, 2019)

From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer. - Tahsin M. Kurç; Ashish Sharma 001; Rajarsi Gupta 001; Le Hou; Han Le; Shahira Abousamra; Erich Bremer; Ryan Birmingham; Tammy Diprima; Nan Li; Feiqiao Wang; Joseph Balsamo; et al. (BrainLes@MICCAI (2), 2019)

Robust Histopathology Image Analysis: To Label or to Synthesize? - Le Hou; Ayush Agarwal; Dimitris Samaras; Tahsin M. Kurç; Rajarsi R. Gupta; Joel H. Saltz (CVPR, 2019)

A Vision for Managing Extreme-Scale Data Hoards. - Jeremy Logan; Kshitij Mehta; Gerd Heber; Scott Klasky; Tahsin M. Kurç; Norbert Podhorszki; Patrick M. Widener; Matthew Wolf (ICDCS, 2019)

Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label Annotations. - Han Le; Dimitris Samaras; Tahsin M. Kurç; Rajarsi Gupta 001; Kenneth Shroyer; Joel H. Saltz (MICCAI (1), 2019)

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. - Jeremias M. Gomes; Willian Barreiros Jr.; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Joel H. Saltz; George Teodoro (Comput. Biol. Medicine, 2019)

Label Super Resolution with Inter-Instance Loss. - Maozheng Zhao; Le Hou; Han Le; Dimitris Samaras; Nebojsa Jojic; Danielle Fassler; Tahsin M. Kurç; Rajarsi R. Gupta; Kolya Malkin; Shahira Abousamra; Kenneth Shroyer; Joel H. Saltz (CoRR, 2019)

Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer. - Han Le; Rajarsi R. Gupta; Le Hou; Shahira Abousamra; Danielle Fassler; Tahsin M. Kurç; Dimitris Samaras; Rebecca Batiste; Tianhao Zhao; Alison L. Van Dyke; Ashish Sharma 001; Erich Bremer; et al. (CoRR, 2019)

Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types. - Shahira Abousamra; Le Hou; Rajarsi R. Gupta; Chao Chen 012; Dimitris Samaras; Tahsin M. Kurç; Rebecca Batiste; Tianhao Zhao; Kenneth Shroyer; Joel H. Saltz (CoRR, 2019)

Run-time Parameter Sensitivity Analysis Optimizations. - Eduardo Scartezini; Willian Barreiros Jr.; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz; George Teodoro (CoRR, 2019)

MPI jobs within MPI jobs: A practical way of enabling task-level fault-tolerance in HPC workflows. - Justin M. Wozniak; Matthieu Dorier; Robert B. Ross; Tong Shu; Tahsin M. Kurç; Li Tang 007; Norbert Podhorszki; Matthew Wolf (Future Gener. Comput. Syst., 2019)

Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. - Luis F. R. Taveira; Tahsin M. Kurç; Alba C. M. A. Melo; Jun Kong 002; Erich Bremer; Joel H. Saltz; George Teodoro (J. Digit. Imaging, 2019)

Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. - Le Hou; Vu Nguyen 004; Ariel B. Kanevsky; Dimitris Samaras; Tahsin M. Kurç; Tianhao Zhao; Rajarsi R. Gupta; Yi Gao 002; Wenjin Chen; David J. Foran; Joel H. Saltz (Pattern Recognit., 2019)

Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer. - David Paredes; Prateek Prasanna; Christina Preece; Rajarsi Gupta 001; Farzad Fereidouni; Dimitris Samaras; Tahsin M. Kurç; Richard M. Levenson 001; Patricia Thompson-Carino; Joel H. Saltz; Chao Chen 012 (ECCV Workshops (1), 2020)

Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images. - Shahira Abousamra; Danielle Fassler; Le Hou; Yuwei Zhang; Rajarsi Gupta 001; Tahsin M. Kurç; Luisa F. Escobar-Hoyos; Dimitris Samaras; Beatrice Knudson; Kenneth Shroyer; Joel H. Saltz; Chao Chen 012 (ISBI, 2020)

Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. - Willian Barreiros Jr.; Jeremias Moreira; Tahsin M. Kurç; Jun Kong 002; Alba C. M. A. Melo; Joel H. Saltz; George Teodoro (Concurr. Comput. Pract. Exp., 2020)

Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types. - Le Hou; Rajarsi Gupta 001; John S. Van Arnam; Yuwei Zhang; Kaustubh Sivalenka; Dimitris Samaras; Tahsin M. Kurç; Joel H. Saltz (CoRR, 2020)

In-situ Workflow Auto-tuning via Combining Performance Models of Component Applications. - Tong Shu; Yanfei Guo; Justin M. Wozniak; Xiaoning Ding; Ian T. Foster; Tahsin M. Kurç (CoRR, 2020)

Extending the Publish/Subscribe Abstraction for High-Performance I/O and Data Management at Extreme Scale. - Jeremy Logan; Mark Ainsworth; Chuck Atkins; Jieyang Chen; Jong Choi 001; Junmin Gu; James Kress; Greg Eisenhauer; Berk Geveci; William F. Godoy; Mark Kim; Tahsin M. Kurç; et al. (IEEE Data Eng. Bull., 2020)

ADIOS 2: The Adaptable Input Output System. A framework for high-performance data management. - William F. Godoy; Norbert Podhorszki; Ruonan Wang; Chuck Atkins; Greg Eisenhauer; Junmin Gu; Philip E. Davis; Jong Choi 001; Kai Germaschewski; Kevin A. Huck; Axel Huebl; Mark Kim; et al. (SoftwareX, 2020)

AI in Medical Imaging Informatics: Current Challenges and Future Directions. - Andreas S. Panayides; Amir A. Amini; Nenad D. Filipovic; Ashish Sharma 001; Sotirios A. Tsaftaris; Alistair A. Young; David J. Foran; Nhan Do; Spyretta Golemati; Tahsin M. Kurç; Kun Huang 001; Konstantina S. Nikita; et al. (IEEE J. Biomed. Health Informatics, 2020)

Informatics to Power Post-COVID Care: A Framework for Patient Care and Secondary Data Use. - Sritha Rajupet; Rachel Wong; Donna Moller; Lisa Maldonado; Tricia Weiss; Tahsin M. Kurç; Janos G. Hajagos; Hasit Shah; Mary M. Saltz; Joel H. Saltz; Veena Lingam (AMIA, 2021)

Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. - Siao Sun; Fusheng Wang 001; Sina Rashidian; Tahsin M. Kurç; Kayley Abell-Hart; Janos G. Hajagos; Wei Zhu 008; Mary M. Saltz; Joel H. Saltz (AMIA, 2021)

Multi-Class Cell Detection Using Spatial Context Representation. - Shahira Abousamra; David Belinsky; John S. Van Arnam; Felicia Allard; Eric Yee; Rajarsi Gupta 001; Tahsin M. Kurç; Dimitris Samaras; Joel H. Saltz; Chao Chen 012 (ICCV, 2021)

In-situ workflow auto-tuning through combining component models. - Tong Shu; Yanfei Guo; Justin M. Wozniak; Xiaoning Ding; Ian T. Foster; Tahsin M. Kurç (PPoPP, 2021)

Bootstrapping in-situ workflow auto-tuning via combining performance models of component applications. - Tong Shu; Yanfei Guo; Justin M. Wozniak; Xiaoning Ding; Ian T. Foster; Tahsin M. Kurç (SC, 2021)

Understanding and Leveraging the I/O Patterns of Emerging Machine Learning Analytics. - Ana Gainaru; Dmitry Ganyushin; Bing Xie; Tahsin M. Kurç; Joel H. Saltz; Sarp Oral; Norbert Podhorszki; Franz Poeschel; Axel Huebl; Scott Klasky (SMC, 2021)

Building robust pathology image analyses with uncertainty quantification. - Jeremias M. Gomes; Jun Kong 002; Tahsin M. Kurç; Alba C. M. A. Melo; Renato Ferreira 001; Joel H. Saltz; George Teodoro (Comput. Methods Programs Biomed., 2021)

Common Limitations of Image Processing Metrics: A Picture Story. - Annika Reinke; Matthias Eisenmann; Minu Dietlinde Tizabi; Carole H. Sudre; Tim Rädsch; Michela Antonelli; Tal Arbel; Spyridon Bakas; M. Jorge Cardoso; Veronika Cheplygina; Keyvan Farahani; Ben Glocker; et al. (CoRR, 2021)

Learning Topological Interactions for Multi-Class Medical Image Segmentation. - Saumya Gupta; Xiaoling Hu 002; James Kaan; Michael Jin; Mutshipay Mpoy; Katherine Chung; Gagandeep Singh; Mary M. Saltz; Tahsin M. Kurç; Joel H. Saltz; Apostolos Tassiopoulos; Prateek Prasanna; et al. (ECCV (29), 2022)

Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes. - André L. S. Meirelles; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (Comput. Methods Programs Biomed., 2022)

Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. - Ujjwal Baid; Sarthak Pati; Tahsin M. Kurç; Rajarsi Gupta 001; Erich Bremer; Shahira Abousamra; Siddhesh P. Thakur; Joel H. Saltz; Spyridon Bakas (CoRR, 2022)

A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment. - Mahmudul Hasan 006; Jakub R. Kaczmarzyk; David Paredes; Lyanne Oblein; Jaymie Oentoro; Shahira Abousamra; Michael Horowitz; Dimitris Samaras; Chao Chen 012; Tahsin M. Kurç; Kenneth R. Shroyer; Joel H. Saltz (CoRR, 2022)

Metrics reloaded: Pitfalls and recommendations for image analysis validation. - Lena Maier-Hein; Annika Reinke; Evangelia Christodoulou; Ben Glocker; Patrick Godau; Fabian Isensee; Jens Kleesiek; Michal Kozubek 001; Mauricio Reyes 001; Michael A. Riegler; Manuel Wiesenfarth; Michael Baumgartner 001; et al. (CoRR, 2022)

Evaluating histopathology transfer learning with ChampKit. - Jakub R. Kaczmarzyk; Tahsin M. Kurç; Shahira Abousamra; Rajarsi Gupta 001; Joel H. Saltz; Peter K. Koo (CoRR, 2022)

AI and Pathology: Steering Treatment and Predicting Outcomes. - Rajarsi Gupta 001; Jakub Kaczmarzyk; Soma Kobayashi; Tahsin M. Kurç; Joel H. Saltz (CoRR, 2022)

Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. - Willian Barreiros Jr.; Alba C. M. A. Melo; Jun Kong 002; Renato Ferreira 001; Tahsin M. Kurç; Joel H. Saltz; George Teodoro (J. Parallel Distributed Comput., 2022)

Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. - Shahira Abousamra; Rajarsi Gupta 001; Tahsin M. Kurç; Dimitris Samaras; Joel H. Saltz; Chao Chen 012 (CVPR, 2023)

Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images. - Shahira Abousamra; Danielle Fassler; Jiachen Yao; Rajarsi R. Gupta; Tahsin M. Kurç; Luisa F. Escobar-Hoyos; Dimitris Samaras; Kenneth Shroyer; Joel H. Saltz; Chao Chen 012 (MIDL, 2023)

Understanding metric-related pitfalls in image analysis validation. - Annika Reinke; Minu Tizabi; Michael Baumgartner 001; Matthias Eisenmann; Doreen Heckmann-Nötzel; A. Emre Kavur; Tim Rädsch; Carole H. Sudre; Laura Ación; Michela Antonelli; Tal Arbel; Spyridon Bakas; et al. (CoRR, 2023)

Open and reusable deep learning for pathology with WSInfer and QuPath. - Jakub R. Kaczmarzyk; Alan O'Callaghan; Fiona Inglis; Tahsin M. Kurç; Rajarsi Gupta 001; Erich Bremer; Peter Bankhead; Joel H. Saltz (CoRR, 2023)

Effective and efficient active learning for deep learning-based tissue image analysis. - André L. S. Meirelles; Tahsin M. Kurç; Jun Kong 002; Renato Ferreira 001; Joel H. Saltz; George Teodoro (Bioinform., 2023)

ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. - Jakub R. Kaczmarzyk; Rajarsi Gupta 001; Tahsin M. Kurç; Shahira Abousamra; Joel H. Saltz; Peter K. Koo (Comput. Methods Programs Biomed., 2023)

Pan-Cancer Tumor Infiltrating Lymphocyte Detection based on Federated Learning. - Ujjwal Baid; Sarthak Pati; Tahsin M. Kurç; Rajarsi Gupta 001; Erich Bremer; Shahira Abousamra; Siddhesh P. Thakur; Joel H. Saltz; Spyridon Bakas (IEEE Big Data, 2024)

Uncertainty Estimation for Tumor Prediction with Unlabeled Data. - Juyoung Yun; Shahira Abousamra; Chen Li 045; Rajarsi Gupta 001; Tahsin M. Kurç; Dimitris Samaras; Alison L. Van Dyke; Joel H. Saltz; Chao Chen 012 (CVPR Workshops, 2024)

PathLDM: Text conditioned Latent Diffusion Model for Histopathology. - Srikar Yellapragada; Alexandros Graikos; Prateek Prasanna; Tahsin M. Kurç; Joel H. Saltz; Dimitris Samaras (WACV, 2024)

RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency. - Wentao Huang; Meilong Xu; Xiaoling Hu 002; Shahira Abousamra; Aniruddha Ganguly; Saarthak Kapse; Alisa Yurovsky; Prateek Prasanna; Tahsin M. Kurç; Joel H. Saltz; Michael L. Miller; Chao Chen 012 (CoRR, 2024)

PixCell: A generative foundation model for digital histopathology images. - Srikar Yellapragada; Alexandros Graikos; Zilinghan Li; Kostas Triaridis; Varun Belagali; Saarthak Kapse; Tarak Nath Nandi; Ravi K. Madduri; Prateek Prasanna; Tahsin M. Kurç; Rajarsi R. Gupta; Joel H. Saltz; et al. (CoRR, 2025)