Marginalized kernels for biological sequences. - Koji Tsuda; Taishin Kin; Kiyoshi Asai (ISMB, 2002)

Minimizing the Cross Validation Error to Mix Kernel Matrices of Heterogeneous Biological Data. - Koji Tsuda; Shinsuke Uda; Taishin Kin; Kiyoshi Asai (Neural Process. Lett., 2004)

Mining frequent stem patterns from unaligned RNA sequences. - Michiaki Hamada; Koji Tsuda; Taku Kudo; Taishin Kin; Kiyoshi Asai (Bioinform., 2006)

SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. - Yasuo Tabei; Koji Tsuda; Taishin Kin; Kiyoshi Asai (Bioinform., 2006)

Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat. - Taishin Kin; Yukiteru Ono (Bioinform., 2007)

Robust prediction of consensus secondary structures using averaged base pairing probability matrices. - Hisanori Kiryu; Taishin Kin; Kiyoshi Asai (Bioinform., 2007)

Murlet: a practical multiple alignment tool for structural RNA sequences. - Hisanori Kiryu; Yasuo Tabei; Taishin Kin; Kiyoshi Asai (Bioinform., 2007)

fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. - Taishin Kin; Kouichirou Yamada; Goro Terai; Hiroaki Okida; Yasuhiko Yoshinari; Yukiteru Ono; Aya Kojima; Yuki Kimura; Takashi Komori; Kiyoshi Asai (Nucleic Acids Res., 2007)

Rfold: an exact algorithm for computing local base pairing probabilities. - Hisanori Kiryu; Taishin Kin; Kiyoshi Asai (Bioinform., 2008)

A fast structural multiple alignment method for long RNA sequences. - Yasuo Tabei; Hisanori Kiryu; Taishin Kin; Kiyoshi Asai (BMC Bioinform., 2008)