A knowledge-based orientation potential for transcription factor-DNA docking. - Takako Takeda; Rosario I. Corona; Jun-tao Guo (Bioinform., 2013)

Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold. - Takako Takeda; Yanli Wang; Stephen H. Bryant (J. Comput. Aided Mol. Des., 2016)

Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge. - Takako Takeda; Ming Hao; Tiejun Cheng; Stephen H. Bryant; Yanli Wang (J. Cheminformatics, 2017)

Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients. - Megan M. Sperry; Tomiko Oskotsky; Ivana Maric; Shruti Kaushal; Takako Takeda; Viktor Horvath; Rani K. Powers; Melissa Rodas; Brooke Furlong; Mercy Soong; Pranav Prabhala; Girija Goyal; et al. (PLoS Comput. Biol., 2023)