Error Evaluation in the Disign of a Special-Purpose Processor That Calculates Nonbonded Forces in Molecular Dynamics Simulations. - Takashi Amisaki; Takaji Fujiwara; Akihiro Kusumi; Hiroo Miyagawa; Kunihiro Kitamura (J. Comput. Chem., 1995)

MOE: A Special-Purpose Parallel Computer for High-Speed, Large-Scale Molecular Orbital Calculation. - Koji Hashimoto; Hiroto Tomita; Koji Inoue; Katsuhiko Metsugi; Kazuaki J. Murakami; Shinjiro Inabata; So Yamada; Nobuaki Miyakawa; Hajime Takashima; Kunihiro Kitamura; Shigeru Obara; Takashi Amisaki; et al. (SC, 1999)

Development of MD Engine: High-speed accelerator with parallel processor design for molecular dynamics simulations. - Shinjiro Toyoda; Hiroh Miyagawa; Kunihiro Kitamura; Takashi Amisaki; Eiri Hashimoto; Hitoshi Ikeda; Akihiro Kusumi; Nobuaki Miyakawa (J. Comput. Chem., 1999)

Precise and efficient Ewald summation for periodic fast multipole method. - Takashi Amisaki (J. Comput. Chem., 2000)

Development of hardware accelerator for molecular dynamics simulations: A computation board that calculates nonbonded interactions in cooperation with fast multipole method. - Takashi Amisaki; Shinjiro Toyoda; Hiroh Miyagawa; Kunihiro Kitamura (J. Comput. Chem., 2003)

Grid-Enabled Applications in Molecular Dynamics Simulations Using a Cluster of Dedicated Computers. - Takashi Amisaki; Shin-ichi Fujiwara (SAINT Workshops, 2004)

Implementation and Evaluation of Multiple GridRPC Services for Molecular Dynamics Simulations of Proteins. - Takashi Amisaki; Shin-ichi Fujiwara (Inf. Media Technol., 2007)

Multilevel superposition for deciphering the conformational variability of protein ensembles. - Takashi Amisaki (Briefings Bioinform., 2024)