PSE: A tool for browsing a large amount of MEDLINE/PubMed abstracts with gene names and common words as the keywords. - Takashi Yoneya (BMC Bioinform., 2005)

A hidden Markov model-based approach for identifying timing differences in gene expression under different experimental factors. - Takashi Yoneya; Hiroshi Mamitsuka (Bioinform., 2007)

TCP: a tool for designing chimera proteins based on the tertiary structure information. - Takashi Yoneya; Reina Nishida (BMC Bioinform., 2009)