SAHG, a comprehensive database of predicted structures of all human proteins. - Chie Motono; Junichi Nakata; Ryotaro Koike; Kana Shimizu; Matsuyuki Shirota; Takayuki Amemiya; Kentaro Tomii; Nozomi Nagano; Naofumi Sakaya; Kiyotaka Misoo; Miwa Sato; Akinori Kidera; et al. (Nucleic Acids Res., 2011)

PSCDB: a database for protein structural change upon ligand binding. - Takayuki Amemiya; Ryotaro Koike; Akinori Kidera; Motonori Ota (Nucleic Acids Res., 2012)

IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature. - Satoshi Fukuchi; Shigetaka Sakamoto; Yukiko Nobe; Seiko D. Murakami; Takayuki Amemiya; Kazuo Hosoda; Ryotaro Koike; Hidekazu Hiroaki; Motonori Ota (Nucleic Acids Res., 2012)

IDEAL in 2014 illustrates interaction networks composed of intrinsically disordered proteins and their binding partners. - Satoshi Fukuchi; Takayuki Amemiya; Shigetaka Sakamoto; Yukiko Nobe; Kazuo Hosoda; Yumiko Kado; Seiko D. Murakami; Ryotaro Koike; Hidekazu Hiroaki; Motonori Ota (Nucleic Acids Res., 2014)

ToGo-WF: prediction of RNA tertiary structures and RNA-RNA/protein interactions using the KNIME workflow. - Satoshi Yamasaki; Takayuki Amemiya; Yukimitsu Yabuki; Katsuhisa Horimoto; Kazuhiko Fukui (J. Comput. Aided Mol. Des., 2019)