BioCompass: A Novel Functional Inference Tool that Utilizes MeSH Hierarchy to Analyze Groups of Genes. - Takeru Nakazato; Toru Takinaka; Hironori Mizuguchi; Hideo Matsuda; Hidemasa Bono; Minoru Asogawa (Silico Biol., 2008)

Gendoo: Functional profiling of gene and disease features using MeSH vocabulary. - Takeru Nakazato; Hidemasa Bono; Hideo Matsuda; Toshihisa Takagi (Nucleic Acids Res., 2009)

MeSH ORA framework: R/Bioconductor packages to support MeSH over-representation analysis. - Koki Tsuyuzaki; Gota Morota; Manabu Ishii; Takeru Nakazato; Satoru Miyazaki; Itoshi Nikaido (BMC Bioinform., 2015)

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. - Toshiaki Katayama; Shuichi Kawashima; Gos Micklem; Shin Kawano; Jin-Dong Kim; Simon Kocbek; Shinobu Okamoto; Yue Wang 040; Hongyan Wu; Atsuko Yamaguchi; Yasunori Yamamoto; Erick Antezana; et al. (F1000Research, 2019)

BioHackathon 2015: Semantics of data for life sciences and reproducible research. - Rutger A. Vos; Toshiaki Katayama; Hiroyuki Mishima; Shin Kawano; Shuichi Kawashima; Jin-Dong Kim; Yuki Moriya; Toshiaki Tokimatsu; Atsuko Yamaguchi; Yasunori Yamamoto; Hongyan Wu; Peter Amstutz; et al. (F1000Research, 2020)