Loop Performance Improvement for Min-cut Program Decomposition Method. - Kanemitsu Ootsu; Takeshi Abe; Takashi Yokota; Takanobu Baba (ICNC, 2010)

An Open Platform toward Large-Scale Multilevel Modeling and Simulation of Physiological Systems. - Yoshiyuki Asai; Hideki Oka; Takeshi Abe; Masao Okita; Kenichi Hagihara; Taishin Nomura; Hiroaki Kitano (SAINT, 2011)

Multilevel Modeling of Physiological Systems and Simulation Platform: PhysioDesigner, Flint and Flint K3 Service. - Yoshiyuki Asai; Takeshi Abe; Masao Okita; Tomohiro Okuyama; Nobukazu Yoshioka; Shigetoshi Yokoyama; Masaru Nagaku; Kenichi Hagihara; Hiroaki Kitano (SAINT, 2012)

A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. - Yoshiyuki Asai; Takeshi Abe; Hideki Oka; Masao Okita; Tomohiro Okuyama; Kenichi Hagihara; Samik Ghosh; Yukiko Matsuoka; Yoshihisa Kurachi; Hiroaki Kitano (EMBC, 2013)

Accelerating ODE-Based Simulation of General and Heterogeneous Biophysical Models Using a GPU. - Tomohiro Okuyama; Masao Okita; Takeshi Abe; Yoshiyuki Asai; Hiroaki Kitano; Taishin Nomura; Kenichi Hagihara (IEEE Trans. Parallel Distributed Syst., 2014)

Granger Causality to Reveal Functional Connectivity in the Mouse Basal Ganglia-Thalamocortical Circuit. - Alessandra Lintas; Takeshi Abe; Alessandro E. P. Villa; Yoshiyuki Asai (ICANN (2), 2018)

Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations. - Takeshi Abe; Yoshiyuki Asai (J. Open Source Softw., 2020)

Towards a perturbation-based explanation for medical AI as differentiable programs. - Takeshi Abe; Yoshiyuki Asai (CoRR, 2025)