An efficient procedure for maintaining materialized views on distributed database systems. - Takeya Kasukawa; Michio Nakanishi; Hideo Matsuda; Akihiro Hashimoto (Syst. Comput. Jpn., 2000)

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones. - Hidemasa Bono; Takeya Kasukawa; Masaaki Furuno; Yoshihide Hayashizaki; Yasushi Okazaki (Nucleic Acids Res., 2002)

READ: RIKEN Expression Array Database. - Hidemasa Bono; Takeya Kasukawa; Yoshihide Hayashizaki; Yasushi Okazaki (Nucleic Acids Res., 2002)

MaXML: mouse annotation XML. - Takeya Kasukawa; Hidemasa Bono; Yoshihide Hayashizaki; Yasushi Okazaki; Hideo Matsuda (Silico Biol., 2003)

CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. - Hideya Kawaji; Takeya Kasukawa; Shiro Fukuda; Shintaro Katayama; Chikatoshi Kai; Jun Kawai; Piero Carninci; Yoshihide Hayashizaki (Nucleic Acids Res., 2006)

A promoter-level mammalian expression atlas. - Fantom Consortium; RIKEN PMII; RIKEN CLST (DGT); Alistair R. R. Forrest; Hideya Kawaji; Michael Rehli; J. Kenneth Baillie; Michiel J. L. de Hoon; Vanja Haberle; Timo Lassmann; Ivan V. Kulakovskiy; Marina Lizio; et al. (Nat., 2014)

EpiFactors: a comprehensive database of human epigenetic factors and complexes. - Yulia A. Medvedeva; Andreas Lennartsson; Rezvan Ehsani; Ivan V. Kulakovskiy; Ilya E. Vorontsov; Pouda Panahandeh; Grigory Khimulya; Takeya Kasukawa; Finn Drabløs (Database J. Biol. Databases Curation, 2015)

FANTOM5 transcriptome catalog of cellular states based on Semantic MediaWiki. - Imad Abugessaisa; Hisashi Shimoji; Serkan Sahin; Atsushi Kondo; Jayson Harshbarger; Marina Lizio; Yoshihide Hayashizaki; Piero Carninci; Alistair R. R. Forrest; Takeya Kasukawa; Hideya Kawaji (Database J. Biol. Databases Curation, 2016)

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. - Marina Lizio; Jayson Harshbarger; Imad Abugessaisa; Shuei Noguchi; Atsushi Kondo; Jessica Severin; Chris Mungall; David J. Arenillas; Anthony Mathelier; Yulia A. Medvedeva; Andreas Lennartsson; Finn Drabløs; et al. (Nucleic Acids Res., 2017)

SCPortalen: human and mouse single-cell centric database. - Imad Abugessaisa; Shuhei Noguchi; Michael Böttcher; Akira Hasegawa; Tsukasa Kouno; Sachi Kato; Yuhki Tada; Hiroki Ura; Kuniya Abe; Jay W. Shin; Charles Plessy; Piero Carninci; et al. (Nucleic Acids Res., 2018)

Update of the FANTOM web resource: expansion to provide additional transcriptome atlases. - Marina Lizio; Imad Abugessaisa; Shuhei Noguchi; Atsushi Kondo; Akira Hasegawa; Chung-Chau Hon; Michiel J. L. de Hoon; Jessica Severin; Shinya Oki; Yoshihide Hayashizaki; Piero Carninci; Takeya Kasukawa; et al. (Nucleic Acids Res., 2019)

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. - Imad Abugessaisa; Jordan A. Ramilowski; Marina Lizio; Jesicca Severin; Akira Hasegawa; Jayson Harshbarger; Atsushi Kondo; Shuhei Noguchi; Chi Wai Yip; Jasmine Li Ching Ooi; Michihira Tagami; Fumi Hori; et al. (Nucleic Acids Res., 2021)