An Index Structure for Spaced Seed Search. - Taku Onodera; Tetsuo Shibuya (ISAAC, 2011)

Succinct de Bruijn Graphs. - Alexander Bowe; Taku Onodera; Kunihiko Sadakane; Tetsuo Shibuya (WABI, 2012)

The Gapped Spectrum Kernel for Support Vector Machines. - Taku Onodera; Tetsuo Shibuya (MLDM, 2013)

Detecting Superbubbles in Assembly Graphs. - Taku Onodera; Kunihiko Sadakane; Tetsuo Shibuya (WABI, 2013)

Fast Classification of Protein Structures by an Alignment-Free Kernel. - Taku Onodera; Tetsuo Shibuya (SPIRE, 2016)

A Preferential Attachment Paradox: How does Preferential Attachment Combine with Growth to Produce Networks with Log-normal In-degree Distributions? - Paul Sheridan; Taku Onodera (CoRR, 2017)

Succinct Oblivious RAM. - Taku Onodera; Tetsuo Shibuya (STACS, 2018)

Wear Leveling Revisited. - Taku Onodera; Tetsuo Shibuya (ISAAC, 2020)

A statistical significance testing approach for measuring term burstiness with applications to domain-specific terminology extraction. - Samuel Sarria Hurtado; Todd Mullen; Taku Onodera; Paul Sheridan (CoRR, 2023)