A Novel Loss Function Incorporating Imaging Acquisition Physics for PET Attenuation Map Generation Using Deep Learning. - Luyao Shi; John A. Onofrey; Enette Mae Revilla; Takuya Toyonaga; David Menard; Joseph Ankrah; Richard E. Carson; Chi Liu 001; Yihuan Lu (MICCAI (4), 2019)

Identifying brain networks in synaptic density PET (11C-UCB-J) with independent component analysis. - Xiaotian T. Fang; Takuya Toyonaga; Ansel T. Hillmer; David Matuskey; Sophie E. Holmes; Rajiv Radhakrishnan; Adam P. Mecca; Christopher H. van Dyck; Deepak Cyril D'Souza; Irina Esterlis; Patrick D. Worhunsky; Richard E. Carson (NeuroImage, 2021)

Partial volume correction analysis for 11C-UCB-J PET studies of Alzheimer's disease. - Yihuan Lu; Takuya Toyonaga; Mika Naganawa; Jean-Dominique Gallezot; Ming-Kai Chen; Adam P. Mecca; Christopher H. van Dyck; Richard E. Carson (NeuroImage, 2021)

Adaptive data-driven motion detection and optimized correction for brain PET. - Enette Mae Revilla; Jean-Dominique Gallezot; Mika Naganawa; Takuya Toyonaga; Kathryn Fontaine; Tim Mulnix; John A. Onofrey; Richard E. Carson; Yihuan Lu (NeuroImage, 2022)

An objective evaluation method for head motion estimation in PET - Motion corrected centroid-of-distribution. - Chen Sun; Enette Mae Revilla; Jiazhen Zhang; Kathryn Fontaine; Takuya Toyonaga; Jean-Dominique Gallezot; Tim Mulnix; John A. Onofrey; Richard E. Carson; Yihuan Lu (NeuroImage, 2022)

Cross-Attention for Improved Motion Correction in Brain PET. - Zhuotong Cai; Tianyi Zeng; Eléonore V. Lieffrig; Jiazhen Zhang; Fuyao Chen; Takuya Toyonaga; Chenyu You; Jingmin Xin; Nanning Zheng 001; Yihuan Lu; James S. Duncan; John A. Onofrey (MLCN@MICCAI, 2023)

POUR-Net: A Population-Prior-Aided Over-Under-Representation Network for Low-Count PET Attenuation Map Generation. - Bo Zhou 009; Jun Hou; Tianqi Chen; Yinchi Zhou; Xiongchao Chen; Huidong Xie; Qiong Liu; Xueqi Guo; Yu-Jung Tsai; Vladimir Y. Panin; Takuya Toyonaga; James S. Duncan; et al. (CoRR, 2024)

Head Motion Degrades Machine Learning Classification of Alzheimer's Disease from Positron Emission Tomography. - Eléonore V. Lieffrig; Takuya Toyonaga; Jiazhen Zhang; John A. Onofrey (CoRR, 2025)

POUR-Net: A Population-Prior-Aided Over-Under-Representation Network for Low-Count PET Attenuation Map Generation. - Bo Zhou 009; Jun Hou; Tianqi Chen; Yinchi Zhou; Xiongchao Chen; Huidong Xie; Qiong Liu; Xueqi Guo; Menghua Xia; Yu-Jung Tsai; Vladimir Y. Panin; Takuya Toyonaga; et al. (IEEE Trans. Medical Imaging, 2025)