A trade-off relationship between energetic cost and entropic cost for in vitro evolution. - Takuyo Aita (Biosyst., 2010)

Toward the fast blind docking of a peptide to a target protein by using a four-body statistical pseudo-potential. - Takuyo Aita; Koichi Nishigaki; Yuzuru Husimi (Comput. Biol. Chem., 2010)

A mathematical consideration of the word-composition vector method in comparison of biological sequences. - Takuyo Aita; Yuzuru Husimi; Koichi Nishigaki (Biosyst., 2011)

Probabilistic model based error correction in a set of various mutant sequences analyzed by next-generation sequencing. - Takuyo Aita; Norikazu Ichihashi; Tetsuya Yomo (Comput. Biol. Chem., 2013)