AluGene: a database of Alu elements incorporated within protein-coding genes. - Tal Dagan; Rotem Sorek; Eilon Sharon; Gil Ast; Dan Graur (Nucleic Acids Res., 2004)

CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes. - Dina Svetlitsky; Tal Dagan; Vered Chalifa-Caspi; Michal Ziv-Ukelson (Bioinform., 2019)

Discovery of multi-operon colinear syntenic blocks in microbial genomes. - Dina Svetlitsky; Tal Dagan; Michal Ziv-Ukelson (Bioinform., 2020)