Exercises in Style (Alpha Specifications). - Uri Abraham; Tamar Pinhas (Fundam. Informaticae, 2003)

SA-REPC - Sequence Alignment with Regular Expression Path Constraint. - Nimrod Milo; Tamar Pinhas; Michal Ziv-Ukelson (LATA, 2010)

Edit Distance with Duplications and Contractions Revisited. - Tamar Pinhas; Dekel Tsur; Shay Zakov; Michal Ziv-Ukelson (CPM, 2011)

Regular Language Constrained Sequence Alignment Revisited. - Gregory Kucherov; Tamar Pinhas; Michal Ziv-Ukelson (J. Comput. Biol., 2011)

Efficient edit distance with duplications and contractions. - Tamar Pinhas; Shay Zakov; Dekel Tsur; Michal Ziv-Ukelson (Algorithms Mol. Biol., 2013)

Recent Results on Three Problems in Comparative Structural RNAomics. - Shay Zakov; Nimrod Milo; Tamar Pinhas; Sivan Yogev; Erez Katzenelson; Eitan Bachmat; Yefim Dinitz; Dekel Tsur; Michal Ziv-Ukelson (CMSR@ECCB, 2014)

Algorithms for path-constrained sequence alignment. - Tamar Pinhas; Nimrod Milo; Gregory Kucherov; Michal Ziv-Ukelson (J. Discrete Algorithms, 2014)