New Approaches to Potential Energy Minimization and Molecular Dynamics Algorithms. - Tamar Schlick (Comput. Chem., 1991)

TNPACK - A truncated Newton minimization package for large-scale problems: I. Algorithm and usage. - Tamar Schlick; Aaron L. Fogelson (ACM Trans. Math. Softw., 1992)

TNPACK - a truncated Newton minimization package for large-scale problems: II. Implementation examples. - Tamar Schlick; Aaron L. Fogelson (ACM Trans. Math. Softw., 1992)

Algorithm 702: TNPACK-a truncated Newton minimization package for large-scale problems: I. Algorithm and usage. - Tamar Schlick; Aaron L. Fogelson (ACM Trans. Math. Softw., 1992)

LIN: A new algorithm to simulate the dynamics of biomolecules by combining implicit-integration and normal mode techniques. - Guihua Zhang; Tamar Schlick (J. Comput. Chem., 1993)

Numerical Experience with Limited-Memory Quasi-Newton and Truncated Newton Methods. - X. Zou; Ionel Michael Navon; M. Berger; Paul Kang-Hoh Phua; Tamar Schlick; François-Xavier Le Dimet (SIAM J. Optim., 1993)

Modified Cholesky Factorizations for Sparse Preconditioners. - Tamar Schlick (SIAM J. Sci. Comput., 1993)

A Truncated Newton Minimizer Adapted for CHARMM and Biomolecular Applications. - Philippe Derreumaux; Guihua Zhang; Tamar Schlick; Bernard R. Brooks (J. Comput. Chem., 1994)

Remark on Algorithm 566. - Victoria Z. Averbukh; Samuel Figueroa; Tamar Schlick (ACM Trans. Math. Softw., 1994)

A Family of Symplectic Integrators: Stability, Accuracy, and Molecular Dynamics Applications. - Robert D. Skeel; Guihua Zhang; Tamar Schlick (SIAM J. Sci. Comput., 1997)

An adaptive multigrid technique for evaluating long-range forces in biomolecular simulations. - Leonid Y. Zaslavsky; Tamar Schlick (Appl. Math. Comput., 1998)

Some Failures and Successes of Long-Timestep Approaches to Biomolecular Simulations. - Tamar Schlick (Computational Molecular Dynamics, 1999)

Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications. - Dexuan Xie; Tamar Schlick (SIAM J. Optim., 1999)

Remark on Algorithm 702 - the updated truncated Newton minimization package. - Dexuan Xie; Tamar Schlick (ACM Trans. Math. Softw., 1999)

Computational challenges in simulating large DNA over long times. - Tamar Schlick; Daniel A. Beard; Jing Huang; Daniel Strahs; Xiaoliang Qian (Comput. Sci. Eng., 2000)

An Efficient Projection Protocol for Chemical Databases: Singular Value Decomposition Combined with Truncated-Newton Minimization. - Dexuan Xie; Alexander Tropsha; Tamar Schlick (J. Chem. Inf. Comput. Sci., 2000)

A new program for optimizing periodic boundary models of solvated biomolecules (PBCAID). - Xiaoliang Qian; Daniel Strahs; Tamar Schlick (J. Comput. Chem., 2001)

A More Lenient Stopping Rule for Line Search Algorithms. - Dexuan Xie; Tamar Schlick (Optim. Methods Softw., 2002)

Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms. - Danny Barash; Linjing Yang; Xiaoliang Qian; Tamar Schlick (J. Comput. Chem., 2003)

Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm. - Qing Zhang; Daniel A. Beard; Tamar Schlick (J. Comput. Chem., 2003)

Multiplicative Operator Splittings in Nonlinear Diffusion: From Spatial Splitting to Multiple Timesteps. - Danny Barash; Tamar Schlick; Moshe Israeli; Ron Kimmel (J. Math. Imaging Vis., 2003)

Searching for 2D RNA geometries in bacterial genomes. - Uri Laserson; Hin Hark Gan; Tamar Schlick (SCG, 2004)

RAG: RNA-As-Graphs database-concepts, analysis, features. - Hin Hark Gan; Daniela Fera; Julie Zorn; Nahum Shiffeldrim; Michael Tang; Uri Laserson; Namhee Kim; Tamar Schlick (Bioinform., 2004)

RAG: RNA-As-Graphs web resource. - Daniela Fera; Namhee Kim; Nahum Shiffeldrim; Julie Zorn; Uri Laserson; Hin Hark Gan; Tamar Schlick (BMC Bioinform., 2004)

Special Section On Multiscale Modeling In Biology. - Tamar Schlick; Ken A. Dill (Multiscale Model. Simul., 2006)

RAGPOOLS: RNA-As-Graph-Pools - a web server for assisting the design of structured RNA pools for in vitro selection. - Namhee Kim; Jin Sup Shin; Shereef Elmetwaly; Hin Hark Gan; Tamar Schlick (Bioinform., 2007)

RAG: An Update to the RNA-As-Graphs Resource. - Joseph A. Izzo; Namhee Kim; Shereef Elmetwaly; Tamar Schlick (BMC Bioinform., 2011)

Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function. - Giulio Quarta; Ken Sin; Tamar Schlick (PLoS Comput. Biol., 2012)

"Gate-keeper" Residues and Active-Site Rearrangements in DNA Polymerase μ Help Discriminate Non-cognate Nucleotides. - Yunlang Li; Tamar Schlick (PLoS Comput. Biol., 2013)

Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide. - Bret D. Freudenthal; William A. Beard; Lalith E. Perera; David D. Shock; Taejin Kim; Tamar Schlick; Samuel H. Wilson (Nat., 2015)

CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking. - Lei Hua; Yang Song; Namhee Kim; Christian Laing; Jason T. L. Wang; Tamar Schlick (CoRR, 2016)

Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots. - Louis Petingi; Tamar Schlick (AlCoB, 2019)

Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. - Jaewoon Jung; Wataru Nishima; Marcus Daniels; Gavin Bascom; Chigusa Kobayashi; Adetokunbo Adedoyin; Michael E. Wall; Anna Lappala; Dominic Phillips; William Fischer 001; Chang-Shung Tung; Tamar Schlick; et al. (J. Comput. Chem., 2019)

RAG-Web: RNA structure prediction/design using RNA-As-Graphs. - Grace Meng; Marva Tariq; Swati Jain; Shereef Elmetwaly; Tamar Schlick (Bioinform., 2020)

Biomolecular modeling thrives in the age of technology. - Tamar Schlick; Stephanie Portillo-Ledesma (Nat. Comput. Sci., 2021)

Publisher Correction: Biomolecular modeling thrives in the age of technology. - Tamar Schlick; Stephanie Portillo-Ledesma (Nat. Comput. Sci., 2021)