A-clustering: a novel method for the detection of co-regulated methylation regions, and regions associated with exposure. - Tamar Sofer; Elizabeth D. Schifano; Jane A. Hoppin; Lifang Hou; Andrea A. Baccarelli (Bioinform., 2013)

Analysis of Sequencing Data: Tutorial Overview Abstract. - Tamar Sofer; Mariaelisa Graff (BCB, 2018)

Genetic association testing using the GENESIS R/Bioconductor package. - Stephanie M. Gogarten; Tamar Sofer; Han Chen; Chaoyu Yu; Jennifer A. Brody; Timothy A. Thornton; Kenneth M. Rice; Matthew P. Conomos (Bioinform., 2019)

Benchmarking association analyses of continuous exposures with RNA-seq in observational studies. - Tamar Sofer; Nuzulul Kurniansyah; François Aguet; Kristin G. Ardlie; Peter Durda; Deborah A. Nickerson; Joshua D. Smith; Yongmei Liu; Sina Gharib; Susan Redline; Stephen S. Rich; Jerome I. Rotter; et al. (Briefings Bioinform., 2021)

Aclust2.0: a revamped unsupervised R tool for Infinium methylation beadchips data analyses. - Oladele A. Oluwayiose; Haotian Wu; Feng Gao; Andrea A. Baccarelli; Tamar Sofer; J. Richard Pilsner (Bioinform., 2022)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)