BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data. - Chenhao Li; Tamar Vered Av-Shalom; Jun Wei Gerald Tan; Junmei Samantha Kwah; Kern Rei Chng; Niranjan Nagarajan (PLoS Comput. Biol., 2021)

Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper. - Phillip Andrew Richmond; Alice Mary Kaye; Godfrain Jacques Kounkou; Tamar Vered Av-Shalom; Wyeth W. Wasserman (PLoS Comput. Biol., 2021)

OnTarget: in silico design of MiniPromoters for targeted delivery of expression. - Oriol Fornes; Tamar Vered Av-Shalom; Andrea J. Korecki; Rachelle A. Farkas; David J. Arenillas; Anthony Mathelier; Elizabeth M. Simpson; Wyeth W. Wasserman (Nucleic Acids Res., 2023)