SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition. - Dmitry Yu. Oshchepkov; Evgenii E. Vityaev 001; Dmitry A. Grigorovich; Elena V. Ignatieva; Tamara M. Khlebodarova (Nucleic Acids Res., 2004)

Application of Bioinformatics Resources for Genosensor Design. - Tamara M. Khlebodarova; Nina V. Tikunova; Alla V. Kachko; Irina L. Stepanenko; Nikolay L. Podkolodny; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

Mathematical Model for Suppression of Subgenomic Hepatitis C Virus RNA Replication in Cell Culture. - Elena L. Mishchenko; Kirill D. Bezmaternykh; Vitali A. Likhoshvai; Alexander V. Ratushny; Tamara M. Khlebodarova; Natalia Yu. Sournina; Vladimir A. Ivanisenko; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2007)

TRRD: Technology for extraction, storage, and use of knowledge about the structural-functional organization of the transcriptional regulatory regions in the eukaryotic genes. - Nikolay A. Kolchanov; Elena V. Ignatieva; Olga A. Podkolodnaya; Elena A. Ananko; Tamara M. Khlebodarova; Irina L. Stepanenko; Tatyana I. Merkulova; Vasily M. Merkulov; Nikolay L. Podkolodny; Aida G. Romashchenko (Intell. Data Anal., 2008)

On the Chaos in gene Networks. - Vitali A. Likhoshvai; Stanislav I. Fadeev; Vladislav V. Kogai; Tamara M. Khlebodarova (J. Bioinform. Comput. Biol., 2013)

Mathematical modeling of bacterial cell cycle: The problem of coordinating genome replication with cell growth. - Vitali A. Likhoshvai; Tamara M. Khlebodarova (J. Bioinform. Comput. Biol., 2014)

Alternative splicing can lead to chaos. - Vitali A. Likhoshvai; Vladislav V. Kogai; Stanislav I. Fadeev; Tamara M. Khlebodarova (J. Bioinform. Comput. Biol., 2015)

Multiple Scenarios of Transition to Chaos in the Alternative Splicing Model. - Vladislav V. Kogai; Vitali A. Likhoshvai; Stanislav I. Fadeev; Tamara M. Khlebodarova (Int. J. Bifurc. Chaos, 2017)

Chaos and hyperchaos in simple gene network with negative feedback and time delays. - Tamara M. Khlebodarova; Vladislav V. Kogai; Stanislav I. Fadeev; Vitali A. Likhoshvai (J. Bioinform. Comput. Biol., 2017)

MAMMOTh: A new database for curated mathematical models of biomolecular systems. - Fedor V. Kazantsev; Ilya R. Akberdin; Sergey A. Lashin; Natalia Ree; Vladimir Timonov; Alexander V. Ratushny; Tamara M. Khlebodarova; Vitali A. Likhoshvai (J. Bioinform. Comput. Biol., 2018)

On the dynamical aspects of local translation at the activated synapse. - Tamara M. Khlebodarova; Vladislav V. Kogai; Vitali A. Likhoshvai (BMC Bioinform., 2020)

Limit cycles in models of circular gene networks regulated by negative feedback loops. - Vitali A. Likhoshvai; Vladimir P. Golubyatnikov; Tamara M. Khlebodarova (BMC Bioinform., 2020)

Reconstruction of the regulatory hypermethylation network controlling hepatocellular carcinoma development during hepatitis C viral infection. - Evgeniya A. Antropova; Tamara M. Khlebodarova; Pavel S. Demenkov; Anastasiia R. Volianskaia; Artur S. Venzel; Nikita V. Ivanisenko; Alexandr D. Gavrilenko; Timofey V. Ivanisenko; Anna V. Adamovskaya; Polina M. Revva; Nikolay A. Kolchanov; Inna N. Lavrik; et al. (J. Integr. Bioinform., 2024)