Evaluation and Optimization of Virtual Screening Workflows with DEKOIS 2.0 - A Public Library of Challenging Docking Benchmark Sets. - Matthias R. Bauer; Tamer M. Ibrahim; Simon M. Vogel; Frank M. Boeckler (J. Chem. Inf. Model., 2013)

Use of DEKOIS 2.0 to gain insights for virtual screening. - Frank M. Boeckler; Matthias R. Bauer; Tamer M. Ibrahim; Simon M. Vogel (J. Cheminformatics, 2014)

Probing the impact of protein and ligand preparation procedures on chemotype enrichment in structure-based virtual screening using DEKOIS 2.0 benchmark sets. - Tamer M. Ibrahim; Matthias R. Bauer; Frank M. Boeckler (J. Cheminformatics, 2014)

Applying DEKOIS 2.0 in structure-based virtual screening to probe the impact of preparation procedures and score normalization. - Tamer M. Ibrahim; Matthias R. Bauer; Frank M. Boeckler (J. Cheminformatics, 2015)

pROC-Chemotype Plots Enhance the Interpretability of Benchmarking Results in Structure-Based Virtual Screening. - Tamer M. Ibrahim; Matthias R. Bauer; Alexander Dörr; Erdem Veyisoglu; Frank M. Boeckler (J. Chem. Inf. Model., 2015)

In-Silico Comparative Analysis of Egyptian SARS CoV-2 with Other Populations: a Phylogeny and Mutation Analysis. - Lamis Sharawy; Maha Tantawy; Yara Ahmed; Ahmed Taha; Omar Soliman; Tamer M. Ibrahim; Mohamed El-Hadidi (NILES, 2020)

Facilitating SARS CoV-2 RNA-Dependent RNA polymerase (RdRp) drug discovery by the aid of HCV NS5B palm subdomain binders: In silico approaches and benchmarking. - Laila K. Elghoneimy; Muhammad I. Ismail; Frank M. Boeckler; Hassan M. E. Azzazy; Tamer M. Ibrahim (Comput. Biol. Medicine, 2021)

Targeting multiple conformations of SARS-CoV2 Papain-Like Protease for drug repositioning: An in-silico study. - Muhammad I. Ismail; Hanan M. Ragab; Adnan A. Bekhit; Tamer M. Ibrahim (Comput. Biol. Medicine, 2021)