CyTOFmerge: integrating mass cytometry data across multiple panels. - Tamim Abdelaal; Thomas Höllt; Vincent van Unen; Boudewijn P. F. Lelieveldt; Frits Koning; Marcel J. T. Reinders; Ahmed Mahfouz (Bioinform., 2019)

SCHNEL: scalable clustering of high dimensional single-cell data. - Tamim Abdelaal; Paul de Raadt; Boudewijn P. F. Lelieveldt; Marcel J. T. Reinders; Ahmed Mahfouz (Bioinform., 2020)

Single-cell Analysis from the perspective of how to Interact, Identify and Integrate cells. - Tamim Roshdy Mohamed Abdelaal (2021)

An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics. - Stavros Makrodimitris; Bram Pronk; Tamim Abdelaal; Marcel J. T. Reinders (Briefings Bioinform., 2023)