An Efficient Algorithm for Computing the Fitness Function of a Hydrophobic-Hydrophilic Model. - Tamjidul Hoque; Madhu Chetty; Laurence Dooley (HIS, 2004)

Partially Computed Fitness Function Based Genetic Algorithm for Hydrophobic-Hydrophilic Model. - Tamjidul Hoque; Madhu Chetty; Laurence Dooley (HIS, 2004)

A new guided genetic algorithm for 2D hydrophobic-hydrophilic model to predict protein folding. - Tamjidul Hoque; Madhu Chetty; Laurence Dooley (Congress on Evolutionary Computation, 2005)

Efficient Computation of Fitness Function by Pruning in Hydrophobic-Hydrophilic Model. - Tamjidul Hoque; Madhu Chetty; Laurence Dooley (ISBMDA, 2005)

A Hybrid Genetic Algorithm for 2D FCC Hydrophobic-Hydrophilic Lattice Model to Predict Protein Folding. - Tamjidul Hoque; Madhu Chetty; Laurence S. Dooley (Australian Conference on Artificial Intelligence, 2006)

A Guided Genetic Algorithm for Protein Folding Prediction Using 3D Hydrophobic-Hydrophilic Model. - Tamjidul Hoque; Madhu Chetty; Laurence S. Dooley (IEEE Congress on Evolutionary Computation, 2006)

Non-Isomorphic Coding in Lattice Model and its Impact for Protein Folding Prediction Using Genetic Algorithm. - Tamjidul Hoque; Madhu Chetty; Laurence S. Dooley (CIBCB, 2006)

Protein folding prediction in 3D FCC HP lattice model using genetic algorithm. - Tamjidul Hoque; Madhu Chetty; Abdul Sattar 001 (IEEE Congress on Evolutionary Computation, 2007)

Generalized Schemata Theorem Incorporating Twin Removal for Protein Structure Prediction. - Tamjidul Hoque; Madhu Chetty; Laurence S. Dooley (PRIB, 2007)

DFS Based Partial Pathways in GA for Protein Structure Prediction. - Tamjidul Hoque; Madhu Chetty; Andrew Lewis; Abdul Sattar 001 (PRIB, 2008)

Extended HP Model for Protein Structure Prediction. - Tamjidul Hoque; Madhu Chetty; Abdul Sattar 001 (J. Comput. Biol., 2009)

Genetic Algorithm inAb Initio Protein Structure Prediction Using Low Resolution Model: A Review. - Tamjidul Hoque; Madhu Chetty; Abdul Sattar 001 (Biomedical Data and Applications, 2009)

Genetic algorithm feature-based resampling for protein structure prediction. - Trent Higgs; Bela Stantic; Tamjidul Hoque; Abdul Sattar 001 (IEEE Congress on Evolutionary Computation, 2010)

DFS-generated pathways in GA crossover for protein structure prediction. - Tamjidul Hoque; Madhu Chetty; Andrew Lewis; Abdul Sattar 001; Vicky M. Avery (Neurocomputing, 2010)

Twin Removal in Genetic Algorithms for Protein Structure Prediction Using Low-Resolution Model. - Tamjidul Hoque; Madhu Chetty; Andrew Lewis; Abdul Sattar 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

A New Genetic Algorithm for Simplified Protein Structure Prediction. - Mahmood A. Rashid; Md. Tamjidul Hoque; M. A. Hakim Newton; Duc Nghia Pham; Abdul Sattar 001 (Australasian Conference on Artificial Intelligence, 2012)

Random-walk: a stagnation recovery technique for simplified protein structure prediction. - Mahmood A. Rashid; Swakkhar Shatabda; M. A. Hakim Newton; Tamjidul Hoque; Duc Nghia Pham; Abdul Sattar 001 (BCB, 2012)

Benefits of Genetic Algorithm Feature-based Resampling for Protein Structure Prediction. - Trent Higgs; Bela Stantic; Tamjidul Hoque; Abdul Sattar 001 (BIOINFORMATICS, 2012)

Refining Genetic Algorithm twin removal for high-resolution protein structure prediction. - Trent Higgs; Bela Stantic; Tamjidul Hoque; Abdul Sattar 001 (IEEE Congress on Evolutionary Computation, 2012)

A local search embedded genetic algorithm for simplified protein structure prediction. - Mahmood A. Rashid; M. A. Hakim Newton; Tamjidul Hoque; Abdul Sattar 001 (IEEE Congress on Evolutionary Computation, 2013)

Collaborative Parallel Local Search for Simplified Protein Structure Prediction. - Mahmood A. Rashid; M. A. Hakim Newton; Md. Tamjidul Hoque; Abdul Sattar 001 (TrustCom/ISPA/IUCC, 2013)

Spiral search: a hydrophobic-core directed local search for simplified PSP on 3D FCC lattice. - Mahmood A. Rashid; M. A. Hakim Newton; Tamjidul Hoque; Swakkhar Shatabda; Duc Nghia Pham; Abdul Sattar 001 (BMC Bioinform., 2013)

Mixing Energy Models in Genetic Algorithms for On-Lattice Protein Structure Prediction. - Mahmood A. Rashid; M. A. Hakim Newton; Md. Tamjidul Hoque; Abdul Sattar 001 (CoRR, 2013)

Amino Acids Pattern-Biased Spiral Search for Protein Structure Prediction. - Mahmood A. Rashid; Md. Masbaul Alam Polash; M. A. Hakim Newton; Md. Tamjidul Hoque; Abdul Sattar 001 (PRICAI, 2014)

A Parallel Framework for Multipoint Spiral Search in ab Initio Protein Structure Prediction. - Mahmood A. Rashid; Swakkhar Shatabda; M. A. Hakim Newton; Tamjidul Hoque; Abdul Sattar 001 (Adv. Bioinformatics, 2014)

Association Rules Mining Based Clinical Observations. - Mahmood A. Rashid; Md. Tamjidul Hoque; Abdul Sattar 001 (CoRR, 2014)

A Homologous Gene Replacement based Genetic Algorithm. - Sumaiya Iqbal; Md. Tamjidul Hoque (GECCO (Companion), 2016)

Guided macro-mutation in a graded energy based genetic algorithm for protein structure prediction. - Mahmood A. Rashid; Sumaiya Iqbal; Firas Khatib; Md. Tamjidul Hoque; Abdul Sattar 001 (Comput. Biol. Chem., 2016)

sDFIRE: Sequence-specific statistical energy function for protein structure prediction by decoy selections. - Md. Tamjidul Hoque; Yuedong Yang; Avdesh Mishra; Yaoqi Zhou (J. Comput. Chem., 2016)

An Enhanced Genetic Algorithm for Ab Initio Protein Structure Prediction. - Mahmood A. Rashid; Firas Khatib; Md. Tamjidul Hoque; Abdul Sattar 001 (IEEE Trans. Evol. Comput., 2016)

Genetic algorithm-based improved sampling for protein structure prediction. - Md. Tamjidul Hoque; Sumaiya Iqbal (Int. J. Bio Inspired Comput., 2017)

hGRGA: A scalable genetic algorithm using homologous gene schema replacement. - Sumaiya Iqbal; Tamjidul Hoque (Swarm Evol. Comput., 2017)

Multiclass patent document classification. - Chaitanya Anne; Avdesh Mishra; Md. Tamjidul Hoque; Shengru Tu (Artif. Intell. Res., 2018)

PBRpredict-Suite: a suite of models to predict peptide-recognition domain residues from protein sequence. - Sumaiya Iqbal; Md. Tamjidul Hoque (Bioinform., 2018)

Machine learning applications in detecting sand boils from images. - Aditi Kuchi; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Maik Flanagin (Array, 2019)

Machine learning applications in detecting rip channels from images. - Corey Maryan; Md. Tamjidul Hoque; Christopher J. Michael 001; Elias Ioup; Mahdi Abdelguerfi (Appl. Soft Comput., 2019)

StackDPPred: a stacking based prediction of DNA-binding protein from sequence. - Avdesh Mishra; Pujan Pokhrel; Md. Tamjidul Hoque (Bioinform., 2019)

Machine Learning based Prediction of Hierarchical Classification of Transposable Elements. - Manisha Panta; Avdesh Mishra; Md. Tamjidul Hoque; Joel Atallah (CoRR, 2019)

A Machine Learning Approach to Determine Oyster Vessel Behavior. - Devin Joseph Frey; Avdesh Mishra; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Thomas Soniat (Mach. Learn. Knowl. Extr., 2019)

Forecasting Rogue Waves in Oceanic Waters. - Pujan Pokhrel; Elias Ioup; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Julian Simeonov (ICMLA, 2020)

Levee-Crack Detection from Satellite or Drone Imagery Using Machine Learning Approaches. - Aditi Kuchi; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Maik C. Flanagin (IGARSS, 2020)

Flight Data of Airplane for Wind Forecasting. - Astha Sharma; Tamjidul Hoque; Elias Ioup; Mahdi Abdelguerfi (IGARSS, 2020)

Random Forest Classifier Based Prediction of Rogue waves on Deep Oceans. - Pujan Pokhrel; Elias Ioup; Md. Tamjidul Hoque; Julian Simeonov; Mahdi Abdelguerfi (CoRR, 2020)

AIBH: Accurate Identification of Brain Hemorrhage Using Genetic Algorithm Based Feature Selection and Stacking. - Duaa Mohammad Alawad; Avdesh Mishra; Md. Tamjidul Hoque (Mach. Learn. Knowl. Extr., 2020)

Hierarchy-Based File Fragment Classification. - Manish Bhatt; Avdesh Mishra; Md Wasi Ul Kabir; S. E. Blake-Gatto; Rishav Rajendra; Md. Tamjidul Hoque; Irfan Ahmed 001 (Mach. Learn. Knowl. Extr., 2020)

AIRBP: Accurate identification of RNA-binding proteins using machine learning techniques. - Avdesh Mishra; Reecha Khanal; Md Wasi Ul Kabir; Tamjidul Hoque (Artif. Intell. Medicine, 2021)

ClassifyTE: a stacking-based prediction of hierarchical classification of transposable elements. - Manisha Panta; Avdesh Mishra; Md. Tamjidul Hoque; Joel Atallah (Bioinform., 2021)

diSBPred: A machine learning based approach for disulfide bond prediction. - Avdesh Mishra; Md Wasi Ul Kabir; Md. Tamjidul Hoque (Comput. Biol. Chem., 2021)

Forecasting Significant Wave Heights in Oceanic Waters. - Pujan Pokhrel; Elias Ioup; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Julian Simeonov (CoRR, 2021)

A LightGBM based Forecasting of Dominant Wave Periods in Oceanic Waters. - Pujan Pokhrel; Elias Ioup; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Julian Simeonov (CoRR, 2021)

Multi-Channel Residual Learning for Marine Mammal Vocalization Classification. - Daniel T. Murphy; Elias Ioup; Christopher J. Michael 001; Md. Tamjidul Hoque; Mahdi Abdelguerfi (IGARSS, 2022)

Pixel-Level Crack Detection in Levee Systems: A Comparative Study. - Manisha Panta; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Maik C. Flanagin (IGARSS, 2022)

Residual Learning for Marine Mammal Classification. - Daniel T. Murphy; Elias Ioup; Md. Tamjidul Hoque; Mahdi Abdelguerfi (IEEE Access, 2022)

Machine Learning Based Restaurant Sales Forecasting. - Austin Schmidt; Md Wasi Ul Kabir; Md. Tamjidul Hoque (Mach. Learn. Knowl. Extr., 2022)

Prediction of Phi and Psi Angle Fluctuations from Protein Sequences. - Md Wasi Ul Kabir; Duaa Mohammad Alawad; Avdesh Mishra; Md. Tamjidul Hoque (CIBCB, 2023)

IterLUNet: Deep Learning Architecture for Pixel-Wise Crack Detection in Levee Systems. - Manisha Panta; Md. Tamjidul Hoque; Mahdi Abdelguerfi; Maik C. Flanagin (IEEE Access, 2023)

Deep Learning Approach for Accurate Segmentation of Sand Boils in Levee Systems. - Manisha Panta; Md. Tamjidul Hoque; Kendall N. Niles; Joe Tom; Mahdi Abdelguerfi; Maik Flanagin (IEEE Access, 2023)

Dual Attention U-Net with Feature Infusion: Pushing the Boundaries of Multiclass Defect Segmentation. - Rasha Alshawi; Md. Tamjidul Hoque; Md Meftahul Ferdaus; Mahdi Abdelguerfi; Kendall N. Niles; Ken Prathak; Joe Tom; Jordan Klein; Murtada Mousa; Johny Javier Lopez (CoRR, 2023)

A Depth-Wise Separable U-Net Architecture with Multiscale Filters to Detect Sinkholes. - Rasha Alshawi; Md. Tamjidul Hoque; Maik C. Flanagin (Remote. Sens., 2023)

CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins. - Alessio Del Conte; Adel Bouhraoua; Mahta Mehdiabadi; Damiano Clementel; Alexander Miguel Monzon; Alex S. Holehouse; Daniel A. Griffith; Ryan J. Emenecker; Ashwini Patil; Ronesh Sharma; Tatsuhiko Tsunoda; Alok Sharma; et al. (Nucleic Acids Res., 2023)

PCa-Clf: A Classifier of Prostate Cancer Patients into Patients with Indolent and Aggressive Tumors Using Machine Learning. - Yashwanth Karthik Kumar Mamidi; Tarun Karthik Kumar Mamidi; Md Wasi Ul Kabir; Jiande Wu; Md. Tamjidul Hoque; Chindo Hicks (Mach. Learn. Knowl. Extr., 2023)

DisPredict3.0: Prediction of intrinsically disordered regions/proteins using protein language model. - Md Wasi Ul Kabir; Md. Tamjidul Hoque (Appl. Math. Comput., 2024)

SHARP-Net: A Refined Pyramid Network for Deficiency Segmentation in Culverts and Sewer Pipes. - Rasha Alshawi; Md Meftahul Ferdaus; Md. Tamjidul Hoque; Kendall N. Niles; Ken Pathak; Steven Sloan; Mahdi Abdelguerfi (CoRR, 2024)

DRBpred: A sequence-based machine learning method to effectively predict DNA- and RNA-binding residues. - Md Wasi Ul Kabir; Duaa Mohammad Alawad; Pujan Pokhrel; Md. Tamjidul Hoque (Comput. Biol. Medicine, 2024)

Application of Deep Learning for Segmenting Seepages in Levee Systems. - Manisha Panta; Padam Jung Thapa; Md. Tamjidul Hoque; Kendall N. Niles; Steven Sloan; Maik Flanagin; Ken Pathak; Mahdi Abdelguerfi (Remote. Sens., 2024)

Synthetic Sand Boil Dataset for Levee Monitoring. - Padam Jung Thapa; Md. Tamjidul Hoque (IEEE DataPort, 2024)

Enhanced Graph Representation Convolution: Effective Inferring Gene Regulatory Network Using Graph Convolution Network with Self-Attention Graph Pooling Layer. - Duaa Mohammad Alawad; Ataur Katebi; Md. Tamjidul Hoque (Mach. Learn. Knowl. Extr., 2024)

PPILS: Protein-protein interaction prediction with language of biological coding. - Nayan Howladar; Md Wasi Ul Kabir; Foyzul Hoque; Ataur Katebi; Md. Tamjidul Hoque (Comput. Biol. Medicine, 2025)

SHARP-Net: A Refined Pyramid Network for Deficiency Segmentation in Culverts and Sewer Pipes. - Rasha Alshawi; Md Meftahul Ferdaus; Md. Tamjidul Hoque; Kendall N. Niles; Ken Pathak; Steven Sloan (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2025)