FiberNeat: Unsupervised White Matter Tract Filtering. - Bramsh Qamar Chandio; Tamoghna Chattopadhyay; Conor Owens-Walton; Julio E. Villalon-Reina; Leila Nabulsi; Sophia I. Thomopoulos; Eleftherios Garyfallidis; Paul M. Thompson (EMBC, 2022)

The Influence of Brain MRI Defacing Algorithms on Brain-Age Predictions via 3D Convolutional Neural Networks. - Ryan J. Cali; Ravi R. Bhatt; Sophia I. Thomopoulos; Shruti Gadewar; Iyad Ba Gari; Tamoghna Chattopadhyay; Neda Jahanshad; Paul M. Thompson (EMBC, 2023)

Comparison of Anatomical and Diffusion MRI for detecting Parkinson's Disease using Deep Convolutional Neural Network. - Tamoghna Chattopadhyay; Amit Singh; Emily Laltoo; Christina P. Boyle; Conor Owens-Walton; Yao-Liang Chen; Philip A. Cook; Corey McMillan; Chih-Chien Tsai; Jiun-Jie Wang; Yih-Ru Wu; Ysbrand D. van der Werf; et al. (EMBC, 2023)

Variational Autoencoders for Generating Synthetic Tractography-Based Bundle Templates in a Low-Data Setting. - Yixue Feng 001; Bramsh Qamar Chandio; Sophia I. Thomopoulos; Tamoghna Chattopadhyay; Paul M. Thompson (EMBC, 2023)

Predictive Modeling Of Alzheimer's Disease Prognosis Using Anatomical & Diffusion MRI. - Nikita Goel; Sophia I. Thomopoulos; Tamoghna Chattopadhyay; Paul M. Thompson (EMBC, 2023)

Transferring Models Trained on Natural Images to 3D MRI via Position Encoded Slice Models. - Umang Gupta; Tamoghna Chattopadhyay; Nikhil J. Dhinagar; Paul M. Thompson; Greg Ver Steeg (ISBI, 2023)

Can Structural MRIs be used to Detect Amyloid Positivity using Deep Learning? - Tamoghna Chattopadhyay; Dheeraj Komandur; Jayati Naik; Ketaki Buwa; Saket Ozarkar; Sophia I. Thomopoulos; Paul M. Thompson (SIPAIM, 2023)

Unsupervised harmonization of brain MRI using 3D CycleGANs and its effect on brain age prediction. - Dheeraj Komandur; Umang Gupta; Tamoghna Chattopadhyay; Nikhil J. Dhinagar; Sophia I. Thomopoulos; Jiu-Chiuan Chen; Dan Beavers; Greg Ver Steeg; Paul M. Thompson (SIPAIM, 2023)

Transferring Models Trained on Natural Images to 3D MRI via Position Encoded Slice Models. - Umang Gupta; Tamoghna Chattopadhyay; Nikhil J. Dhinagar; Paul M. Thompson; Greg Ver Steeg; Alzheimer's Disease Neuroimaging Initiative (CoRR, 2023)

Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer's Disease. - Yixue Feng 001; Bramsh Qamar Chandio; Julio E. Villalon-Reina; Sebastian M. Benavidez; Tamoghna Chattopadhyay; Sasha Chehrzadeh; Emily Laltoo; Sophia I. Thomopoulos; Himanshu Joshi; Ganesan Venkatasubramanian; John P. John; Neda Jahanshad; et al. (EMBC, 2024)

Brain Age Analysis and Dementia Classification using Convolutional Neural Networks trained on Diffusion MRI: Tests in Indian and North American Cohorts. - Tamoghna Chattopadhyay; Neha Ann Joshy; Saket Ozarkar; Ketaki Buwa; Yixue Feng 001; Emily Laltoo; Sophia I. Thomopoulos; Julio Villalon; Himanshu Joshi; Ganesan Venkatasubramanian; John P. John; Paul M. Thompson (EMBC, 2024)

Comparison of Explainable AI Models for MRI-Based Alzheimer's Disease Classification. - Tamoghna Chattopadhyay; Neha Ann Joshy; Chirag Jagad; Emma J. Gleave; Sophia I. Thomopoulos; Yixue Feng 001; Julio E. Villalon-Reina; Emily Laltoo; Himanshu Joshi; Ganesan Venkatasubramanian; John P. John; Greg Ver Steeg; et al. (SIPAIM, 2024)

Diffusion Bridge Models for 3D Medical Image Translation. - Shaorong Zhang; Tamoghna Chattopadhyay; Sophia I. Thomopoulos; José Luis Ambite; Paul M. Thompson; Greg Ver Steeg (CoRR, 2025)