Application of asymmetric statistical potentials to antibody-protein docking. - Ryan Brenke; David R. Hall; Gwo-Yu Chuang; Stephen R. Comeau; Tanggis Bohnuud; Dmitri Beglov; Ora Schueler-Furman; Sandor Vajda; Dima Kozakov (Bioinform., 2012)

FTMAP: extended protein mapping with user-selected probe molecules. - Chi-Ho Ngan; Tanggis Bohnuud; Scott E. Mottarella; Dmitri Beglov; Elizabeth A. Villar; David R. Hall; Dima Kozakov; Sandor Vajda (Nucleic Acids Res., 2012)

Evidence of Conformational Selection Driving the Formation of Ligand Binding Sites in Protein-Protein Interfaces. - Tanggis Bohnuud; Dima Kozakov; Sandor Vajda (PLoS Comput. Biol., 2014)

Focused grid-based resampling for protein docking and mapping. - Artem B. Mamonov; Mohammad Moghadasi; Hanieh Mirzaei; Shahrooz Zarbafian; Laurie E. Grove; Tanggis Bohnuud; Pirooz Vakili; Ioannis Ch. Paschalidis; Sandor Vajda; Dima Kozakov (J. Comput. Chem., 2016)

ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT. - Kathryn A. Porter; Bing Xia; Dmitri Beglov; Tanggis Bohnuud; Nawsad Alam; Ora Schueler-Furman; Dima Kozakov (Bioinform., 2017)