StemChecker: a web-based tool to discover and explore stemness signatures in gene sets. - José P. Pinto; Ravi Kiran Reddy Kalathur; Daniel V. Oliveira 001; Tânia Barata; Rui S. R. Machado; Susana Machado; Ivette Pacheco-Leyva; Isabel Duarte; Matthias E. Futschik (Nucleic Acids Res., 2015)

Reconstruction of tissue-specific genome-scale metabolic models for human cancer stem cells. - Tânia Barata; Vítor Vieira; Rúben Rodrigues; Ricardo Pires das Neves; Miguel Rocha 001 (Comput. Biol. Medicine, 2022)

Reconstruction of cell-specific models capturing the influence of metabolism on DNA methylation in cancer. - Tânia Barata; Vítor Pereira 001; Ricardo Pires das Neves; Miguel Rocha 001 (Comput. Biol. Medicine, 2024)