In silico sequence evolution with site-specific interactions along phylogenetic trees. - Tanja Gesell; Arndt von Haeseler (Bioinform., 2006)

A comparative analysis of multidimensional features of objects resembling sets of graphs. - Matthias Dehmer; Frank Emmert-Streib; Tanja Gesell (Appl. Math. Comput., 2008)

Dinucleotide controlled null models for comparative RNA gene prediction. - Tanja Gesell; Stefan Washietl (BMC Bioinform., 2008)

Graph Representations and Algorithms in Computational Biology of RNA Secondary Structure. - Stefan Washietl; Tanja Gesell (Structural Analysis of Complex Networks, 2011)

PETcofold: predicting conserved interactions and structures of two multiple alignments of RNA sequences. - Stefan E. Seemann; Andreas S. Richter; Tanja Gesell; Rolf Backofen; Jan Gorodkin (Bioinform., 2011)