Model-based analysis of influenza A virus replication in genetically engineered cell lines elucidates the impact of host cell factors on key kinetic parameters of virus growth. - Tanja Laske; Mandy Bachmann; Melanie Dostert; Alexander Karlas; Dagmar Wirth; Timo Frensing; Thomas F. Meyer; Hansjörg Hauser; Udo Reichl (PLoS Comput. Biol., 2019)

Multiscale modeling of influenza A virus replication in cell cultures predicts infection dynamics for highly different infection conditions. - Daniel Rüdiger; Sascha Young Kupke; Tanja Laske; Pawel Zmora; Udo Reichl (PLoS Comput. Biol., 2019)

Model-based approach for predicting the impact of genetic modifications on product yield in biopharmaceutical manufacturing - Application to influenza vaccine production. - Stefanie Duvigneau; Robert Dürr; Tanja Laske; Mandy Bachmann; Melanie Dostert; Achim Kienle (PLoS Comput. Biol., 2020)

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. - Yuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Törne; Teresa Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; et al. (CoRR, 2024)

UnPaSt: unsupervised patient stratification by differentially expressed biclusters in omics data. - Michael Hartung; Andreas Maier 009; Fernando M. Delgado-Chaves; Yuliya Burankova; Olga I. Isaeva; Fábio Malta de Sá Patroni; Daniel He; Casey Shannon; Katharina Kaufmann; Jens Lohmann; Alexey Savchik; Anne Hartebrodt; et al. (CoRR, 2024)

Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE. - Lis Arend; Klaudia Adamowicz; Johannes R. Schmidt; Yuliya Burankova; Olga I. Zolotareva; Olga Tsoy; Josch Konstantin Pauling; Stefan Kalkhof; Jan Baumbach; Markus List; Tanja Laske (Briefings Bioinform., 2025)

DRaCOon: a novel algorithm for pathway-level differential co-expression analysis in transcriptomics. - Fernando M. Delgado-Chaves; Ferdinand Spurny; Tanja Laske; Mhaned Oubounyt; Jan Baumbach (BMC Bioinform., 2025)